Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1354
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05084.1 68415.m00532 hypothetical protein                          30   1.2  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    29   2.8  
At5g34950.1 68418.m04124 replication protein-related weak simila...    29   3.7  

>At2g05084.1 68415.m00532 hypothetical protein
          Length = 258

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 363 NSIFYNIYWSKY-NIFSTTFFRFSWNTSTIFRLSRLIYFMKYNFF 494
           N I   I W +Y N F TT F   W     FRL R     KY  F
Sbjct: 48  NRIDARIPWGEYMNNFKTTLFEGKWYYLQHFRLKRATTIPKYTDF 92


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1183

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 318  ISFIYRPFIKXLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRL 467
            IS + R F+   Y++ + F  +  +KY+I ST   R SW      +L ++
Sbjct: 1021 ISDLVRDFMNEEYSQEAPFRLVCITKYSIASTNNMRTSWREPMRIKLPKI 1070


>At5g34950.1 68418.m04124 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 234

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = +3

Query: 363 NSIFYNIYWSKY-NIFSTTFFRFSWNTSTIFRLSRLIYFMKYNFF 494
           N I   I W +Y N F T  F   W     FRL R     KY  F
Sbjct: 48  NKIDARIPWGEYMNNFKTNLFEGKWYYLQHFRLKRATTIPKYTDF 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,929,775
Number of Sequences: 28952
Number of extensions: 158606
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)