Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1353
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   1.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.2  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   9.6  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 520 PVSGGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDAR-QGGGAYG 374
           PV  G+  +SAR S+ G+  GI  +L   + S    DF +    G G +G
Sbjct: 519 PVEQGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFLGRGGFG 568


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 496 PVPTRRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSLAVCTNPPFSPTAA 657
           P+P   + DT   + L  A+     H  GIS+    F   + V  N P SP+++
Sbjct: 268 PIPPATVNDTSMEYYLPNAY----PHPTGISLPFYPFDSGIPVSPNIPVSPSSS 317


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 465 VSPWKLPRALSCSDPPLTGYLSAFLPSGSVALSHSSRCRYLSSV 596
           + P K+P++L  + P    Y+S+ L +       +++ R+L SV
Sbjct: 148 IRPSKIPKSLPSNSPVRLPYISSLLSAVFEINMENAKIRHLPSV 191


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 609 SERPTPN*DTYSVSYEKAPRFPK 541
           S   +P  D+YS  YEK   FPK
Sbjct: 131 SRANSPQSDSYSSPYEKGKLFPK 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,722
Number of Sequences: 5004
Number of extensions: 53773
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)