Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1353
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 31 0.61
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 30 1.9
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 29 3.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 29 4.3
05_06_0086 - 25447063-25447182,25448082-25448702 29 4.3
02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26... 29 4.3
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 5.7
03_02_0178 + 6195402-6199158,6199438-6200003 28 5.7
07_03_1094 + 23919878-23920520,23921297-23921363,23921364-239214... 28 7.5
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 28 7.5
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 7.5
04_03_0094 - 11113279-11114469 28 7.5
06_03_1257 - 28790660-28790785,28791126-28791283,28791528-287916... 27 9.9
06_03_0801 + 24714725-24715501 27 9.9
01_06_0826 - 32252546-32253208 27 9.9
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 31.5 bits (68), Expect = 0.61
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = -3
Query: 610 ERTTYTELRYLQREL*ESATLPEGRKADRYPVSGGSEQESARGSFQGETPGIFIVLSGFA 431
E T E RE+ E A LP+G A + ++GG +ESA T GI +V A
Sbjct: 204 EAATEPEAEVSMREVTEGA-LPDGEGAAKLEITGGLSRESA--DKMEVTKGISLVTEASA 260
Query: 430 TSDLS 416
S+L+
Sbjct: 261 DSELA 265
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 362 CWRXSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 508
CWR + T D Q + +KD P + PSC L+F P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIP 331
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1
Query: 391 PDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTRRLPDTCP 531
P HHK+ Q R P + Q PP + P P R P P
Sbjct: 20 PSPHHKHHHHHQTTRAPKPKPKPQPPPPQQPRSQPPPPPRHQPQQAP 66
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 144 NESAN---ARGEAVCVLGALPLPRSLTRCARSFGCGERYQSL 260
+ESAN AR EAV +G +P+ L RC+R E +++
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSRESAQSEAAKAI 475
>05_06_0086 - 25447063-25447182,25448082-25448702
Length = 246
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -3
Query: 403 DARQGGGAYGXTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSD*YRSPQPNDR 224
+A G G G+W G++ C+ L PPL+ RSP+P
Sbjct: 75 EAADAWGGSGVAGPCAEAAGAWGNGGVVSPCADAARQRPLNAAATPPLT---RSPRPAGG 131
Query: 223 AQRVSERGS 197
+ R S+RGS
Sbjct: 132 SPRRSDRGS 140
>02_01_0037 +
261405-261779,261880-262065,262185-262271,262341-262420,
262518-262599,262794-262814,263204-263249,263365-263483,
263685-263798,263885-263959,264068-264157,264604-264713,
264902-265160
Length = 547
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 155 GRFINAAGTTG-FPTGKRAVSATQLM*VSSLIRHPRHYTLCFRLVCCVE 12
G I A G G +P GK+ VSA QL S +RH + L +LV V+
Sbjct: 146 GHMITAVGGHGGYPGGKQFVSADQLRDKLSYLRHEK--ALIIKLVDIVD 192
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 165 PARWPIH*CSWHDRFPDWKAG 103
P +W +H WH P W++G
Sbjct: 900 PDQWGLHIVIWHGASPSWRSG 920
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 412 RRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTRRLP 519
RR S WR+ GL Y+A P S P P RLP
Sbjct: 113 RRQSGGWRDSEGLDGYRAAPRRSG-ASPPTPPLRLP 147
>07_03_1094 +
23919878-23920520,23921297-23921363,23921364-23921453,
23922220-23922284,23922372-23922470,23922851-23922992,
23923100-23923139
Length = 381
Score = 27.9 bits (59), Expect = 7.5
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +3
Query: 114 SRETCRASCINESANA---RGEAVCVLGALPLPRSLTRCARSFGCGERYQSLK--GGNTV 278
S E A+C+ A+ E V V A P+ C+ CG+ Y S + GG+
Sbjct: 51 SEEEYLAACLLMLAHGVRDEAEVVGVAAATAKPQHGYECSV---CGKVYGSYQALGGHKT 107
Query: 279 IHRIRG*RRKEHVSKRPAKGQEP*KGRVAG 368
HR + + PA G+EP G VAG
Sbjct: 108 SHR-----KPPSPAAEPAAGEEPSSGGVAG 132
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 108 LSSRETCRASCINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQ 254
+S R C A +N+ R + P PR+ RC + GC R Q
Sbjct: 264 VSVRARCDAPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAAGCPVRKQ 312
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +1
Query: 511 RLPDTCPPFSLREAWRFLIA-----HAVGISVRCRS 603
RL D C P L+E WRFL+A A S RC++
Sbjct: 849 RLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKA 883
>04_03_0094 - 11113279-11114469
Length = 396
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 415 RSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTR--RLPDTCPPFSLREAWRFLIAHAVGI 585
+ +RW N +G ++++ +PTR RL PP+ LR+ W F I G+
Sbjct: 56 KKGERWGNVSGQKTCFDHQVTAAILGKDLPTRKFRLDAFYPPYDLRDQW-FAIVSVSGL 113
>06_03_1257 -
28790660-28790785,28791126-28791283,28791528-28791604,
28791825-28791955
Length = 163
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -3
Query: 286 LWITVLPPLSD*YRSPQPNDRAQRVSERGSG--RAPNTQTASPRALADSLMQLARQVSRL 113
+W +LPPLS Y QP + S+ P T PR + + L + V+RL
Sbjct: 1 MWAPLLPPLSATYTRTQPCKNPCQFSQPTPAFPSRPLTPPPPPRKMVEHLFEDIFTVTRL 60
Query: 112 E 110
+
Sbjct: 61 D 61
>06_03_0801 + 24714725-24715501
Length = 258
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 132 ASCINESANARGEAVCVLGA 191
A+C+ E A RG VC++GA
Sbjct: 91 AACVAEYARRRGRGVCLMGA 110
>01_06_0826 - 32252546-32253208
Length = 220
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 426 EVAKPDRTIKIPGVSPWKLPRALSCSDPPLTGYLSAFLPSGSVALSHSS 572
EV+KP R + G LP L+C T P+G A S SS
Sbjct: 5 EVSKPSRRLSPKGSFKLSLPSLLACGQCKATAVSPPESPTGVGARSFSS 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,428,688
Number of Sequences: 37544
Number of extensions: 479505
Number of successful extensions: 1534
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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