Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1353
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54460.1 68414.m06212 expressed protein                             33   0.13 
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   2.7  
At4g16550.1 68417.m02504 heat shock protein-related contains sim...    29   3.6  
At1g19490.1 68414.m02428 bZIP transcription factor family protei...    29   3.6  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    28   4.8  
At4g04490.1 68417.m00651 protein kinase family protein contains ...    28   4.8  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    28   6.3  
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    28   6.3  
At4g25430.1 68417.m03657 hypothetical protein                          27   8.3  
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    27   8.3  

>At1g54460.1 68414.m06212 expressed protein
          Length = 338

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +1

Query: 481 SLVRSPVPTRRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSLAVCTNPPFSPTA 654
           S + SP+PTRR+PD        E   F +A +   S+  RSF P + +   P FS T+
Sbjct: 118 SQLNSPLPTRRIPD--HKMHHDEEDSFSVASSSATSI--RSFKPKITIGVAPTFSSTS 171


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 385 RPPDEHHKNRRSSQRW 432
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At4g16550.1 68417.m02504 heat shock protein-related contains
           similarity to Swiss-Prot:P31170 small heat shock
           protein, chloroplast precursor [Arabidopsis thaliana]
          Length = 743

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 405 QKSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPPLTG 521
           Q+S+  S +A PD    + G  P K P     +DP LTG
Sbjct: 603 QRSSCISFLAGPDFREDLRGNGPHKFPHGTDPNDPKLTG 641


>At1g19490.1 68414.m02428 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 471

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 198 LPRSLTRCARSFGCGERYQSLKGGNTVIHRIR 293
           L  +L RC+RS GCG   Q+L        RIR
Sbjct: 132 LASTLIRCSRSNGCGRSRQNLSEAEREERRIR 163


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
            profile PF05182: Fip1 motif
          Length = 1192

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -2

Query: 641  NGGFVHTAKLGANDLH--RTEIPTA*AMRKRHASRREKGGQVSGKRR 507
            NG  V T   G ND    R+EIP      KRH      G ++   +R
Sbjct: 1003 NGSSVVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKR 1049


>At4g04490.1 68417.m00651 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 658

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 341 GTVKRPRC---WRXSIGSAPLTSITKIDAQVRGGETRQDYK 454
           GTV RP C   W     +    ++ ++ A  R  +TRQDY+
Sbjct: 230 GTVARPSCYFRWDDYRFAGAFDNLERVPAPPRSPQTRQDYR 270


>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
           - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = -3

Query: 538 RKADRYPVSGGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGXTPAT 359
           +K  +    G S + S+R SF           S F+++D+S       Q G + G  P  
Sbjct: 75  KKTAKEKQRGVSSESSSRLSFSSSPCS-----SSFSSADISTTASQFEQPGLSNGENPVR 129

Query: 358 RPFYGSWPFAGLLL 317
            P  GS  + GL++
Sbjct: 130 EPTNGSPRWGGLMM 143


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -3

Query: 436 FATSDLSVDFCDARQGGGAYGXTPATRPFYGSWPFAGLLLTCSFLRYPLI 287
           F  S  S+D+         YG   A  P YGS P  G+    +   YP +
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYL 187


>At4g25430.1 68417.m03657 hypothetical protein
          Length = 455

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 289 ILWITVLPPLSD*YRSPQPNDRAQRVSERGSGRAPNTQTASPRALADS 146
           ++ + +LP   +  RSP+   R  R+S  GSG    +  ASPR  +DS
Sbjct: 141 LMGLDLLPDNLELTRSPRNGVRGHRLSGNGSG--TRSLPASPRISSDS 186


>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +3

Query: 426 EVAKPDRTIKIPGVSPWKLPRALSCSDPPLTGYLSAFLPSGSVALSH 566
           +V KPD  I  PG   W      S  DP LTG   A L   S+A  H
Sbjct: 579 DVLKPD--ILAPGHQIWGAWSLPSAFDPILTGRSFAILSGTSMATPH 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,529
Number of Sequences: 28952
Number of extensions: 324453
Number of successful extensions: 914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)