Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1348
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   105   5e-24
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  105 bits (253), Expect = 5e-24
 Identities = 50/84 (59%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
 Frame = +1

Query: 1   AIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-PN 177
           +I LLG +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   
Sbjct: 285 SIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVP 344

Query: 178 IL*RLGFVFLFTVGGLTGVILANS 249
           +L  +GF+ LFT+GGLTGVIL+NS
Sbjct: 345 MLYAIGFLILFTIGGLTGVILSNS 368



 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 44/85 (51%), Positives = 53/85 (62%)
 Frame = +3

Query: 255 DITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNI 434
           DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ +FIGVNI
Sbjct: 371 DIAFHDTYFVVAHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWILFIGVNI 429

Query: 435 TFFPQHFLGLAGIPRRYSDYPDSYI 509
            F PQHFLGL G+PRR  DYP++++
Sbjct: 430 VFGPQHFLGLNGMPRRIPDYPEAFV 454


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 558 TDNREIYEPNEEIIFHEYMSLDNLNIVEVFQLNLKNVVEKMLYLLQ 421
           T NRE+ E NEEI+    +++ +  I    +L+L+N +  +L  L+
Sbjct: 452 TTNREVEEENEEILL-VLLNIISSVIGRNAELDLENPISSLLPALE 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,616
Number of Sequences: 5004
Number of extensions: 33241
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)