Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1348
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 103 1e-22
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 8.5
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 103 bits (247), Expect = 1e-22
Identities = 48/84 (57%), Positives = 54/84 (64%)
Frame = +3
Query: 255 DITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNI 434
D+ +HDTYYVVAHFHYVLS + TG N KI F+ +FIGVNI
Sbjct: 68 DVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNI 127
Query: 435 TFFPQHFLGLAGIPRRYSDYPDSY 506
TFFPQHFLGLAG PRRYSD+ D Y
Sbjct: 128 TFFPQHFLGLAGFPRRYSDFADGY 151
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/66 (66%), Positives = 56/66 (84%)
Frame = +1
Query: 55 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 234
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFVFLFT+GGLTGV
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60
Query: 235 ILANSS 252
ILANSS
Sbjct: 61 ILANSS 66
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 635 SIE*YQNLPPAEHSYNELPIL 697
S+E Q PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/47 (68%), Positives = 35/47 (74%)
Frame = +3
Query: 366 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSY 506
TG N KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D Y
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGY 65
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 635 SIE*YQNLPPAEHSYNELPIL 697
S+E Q PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 450 HFLGLAGIPRRYSDYPDSY 506
HFLGLAG PRRYSD+ D Y
Sbjct: 1 HFLGLAGFPRRYSDFADGY 19
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 635 SIE*YQNLPPAEHSYNELPIL 697
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 450 HFLGLAGIPRRYSDYPDSY 506
HFLGLAG PRRYSD+ D Y
Sbjct: 1 HFLGLAGFPRRYSDFADGY 19
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 450 HFLGLAGIPRRYSDYPDSY 506
HFLGLAG PRRYSD+ D Y
Sbjct: 1 HFLGLAGFPRRYSDFADGY 19
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 635 SIE*YQNLPPAEHSYNELPIL 697
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 450 HFLGLAGIPRRYSDYPDSY 506
HFLGLAG PRRYSD+ D Y
Sbjct: 1 HFLGLAGFPRRYSDFADGY 19
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 635 SIE*YQNLPPAEHSYNELPIL 697
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 450 HFLGLAGIPRRYSDYPDSY 506
HFLGLAG PRRYSD+ D Y
Sbjct: 1 HFLGLAGFPRRYSDFADGY 19
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 635 SIE*YQNLPPAEHSYNELPIL 697
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 450 HFLGLAGIPRRYSDYPDSY 506
HFLGLAG PRRYSD+ D Y
Sbjct: 1 HFLGLAGFPRRYSDFADGY 19
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 635 SIE*YQNLPPAEHSYNELPIL 697
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 34 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 183
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 353 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 475
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 624 ISHHQLNDIKIYHQQNIHIMNYQF 695
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,473
Number of Sequences: 59808
Number of extensions: 201021
Number of successful extensions: 348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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