Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1346
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   130   1e-31
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    29   0.85 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   2.6  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   4.5  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   4.5  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   6.0  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  130 bits (315), Expect = 1e-31
 Identities = 63/88 (71%), Positives = 70/88 (79%)
 Frame = +1

Query: 244 IRKCNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADTYPIGVHTLPKK 423
           ++   HII+LA GRLVNLGCATGH SFVMS SFTNQVLAQI LWT   +YP+GVH LPKK
Sbjct: 331 LKNGRHIILLADGRLVNLGCATGHPSFVMSCSFTNQVLAQIALWTDNTSYPLGVHMLPKK 390

Query: 424 LDEEVAALHLDHLGVKLTKLTPKQAKYI 507
           LDEEVA LHL  LGVKLT LT  Q+ Y+
Sbjct: 391 LDEEVARLHLGKLGVKLTTLTSVQSDYL 418



 Score =  126 bits (305), Expect = 2e-30
 Identities = 64/92 (69%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
 Frame = +2

Query: 2   NALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNIGHFDCEID 181
           NALQAAM+GF+VTTMEEA + GQIFVTTTG  DII  EH   MK+D+IVCNIGHFD EID
Sbjct: 249 NALQAAMDGFEVTTMEEAVKEGQIFVTTTGCRDIIRGEHFNEMKEDSIVCNIGHFDVEID 308

Query: 182 VAWLDNNAKK-VNIKQHVDRYELENVTILLFL 274
           VAWL  NAK  VNIK  VDRYEL+N   ++ L
Sbjct: 309 VAWLKANAKDVVNIKPQVDRYELKNGRHIILL 340



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 519 EGPYKPDHYRY 551
           +GPYK DHYRY
Sbjct: 423 DGPYKADHYRY 433


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 457 HLGVKLTKLTPKQAKYIVSLEKDL 528
           H GV +T +TP+Q KY V + K L
Sbjct: 764 HTGVAVTFITPEQEKYAVDIAKAL 787


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 204 ALLSSHATSISQSK*PMLHTIASSFILRRCSLHIMSIFPVVVTKI*PTS 58
           A L    + I   K   LH I   F LRR    ++  FP  V  I P S
Sbjct: 743 AELEKRYSIIDTEKVTELHQILKPFFLRRVKSEVLDNFPTKVEVIIPLS 791


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 341 NELDITKEEWPVAQPKLTSLPA 276
           NE ++TK + P+ +PKL   P+
Sbjct: 281 NERELTKHKLPIVKPKLAVFPS 302


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 475 TKLTPKQAKYIVSLEKDLTSQIITD 549
           TK  P  AK I SLE+ L+S+ ITD
Sbjct: 484 TKSNPLPAKSIDSLERALSSKKITD 508


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 128 MKDDAIVCNIGHFDCEIDVAWLDNNAKKVNIKQHVD 235
           + +D IVC  G    +ID   LD N    NI +H D
Sbjct: 408 VNEDDIVCFQGSLWTQIDKNALDYNDSADNIDEHKD 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,437
Number of Sequences: 5004
Number of extensions: 58284
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)