Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1346
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888    105   4e-23
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   6.2  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score =  105 bits (251), Expect = 4e-23
 Identities = 53/80 (66%), Positives = 61/80 (76%), Gaps = 2/80 (2%)
 Frame = +1

Query: 262 IIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADT--YPIGVHTLPKKLDEE 435
           IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+ELW +  T  Y   V+ LPK LDE+
Sbjct: 353 IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEK 412

Query: 436 VAALHLDHLGVKLTKLTPKQ 495
           VA LHL  LG +LTKL+  Q
Sbjct: 413 VACLHLGKLGARLTKLSKSQ 432



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
 Frame = +2

Query: 5   ALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNIGHFDCEIDV 184
           ALQA MEG QV T+E+      IFVTTTGN DII  +H+ +MK++AIVCNIGHFD EID+
Sbjct: 264 ALQALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDM 323

Query: 185 AWLDN--NAKKVNIKQHVDRYELENVTILLFLLQEDWLI 295
             L+     K++ IK   DR+        + +L E  L+
Sbjct: 324 LGLETYPGVKRITIKPQTDRWVFPETNTGIIVLAEGRLM 362


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 74  FVTTTGNIDIICKEHLLRMKDDAIVCNIGHF 166
           F+      D+  K H++RMK  A +CN  HF
Sbjct: 289 FLNAQSTNDMFAKLHVVRMKKVACLCNEMHF 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,291,640
Number of Sequences: 37544
Number of extensions: 339707
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)