Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1346
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   3e-33
SB_21953| Best HMM Match : UME (HMM E-Value=6.1)                       29   3.6  
SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  

>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score =  138 bits (335), Expect = 3e-33
 Identities = 63/83 (75%), Positives = 72/83 (86%)
 Frame = +1

Query: 259 HIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADTYPIGVHTLPKKLDEEV 438
           H+++LA GRLVNLGCA GH SFVMSNSFTNQVLAQIELWT+ + YP+ V+ LPK LDE+V
Sbjct: 337 HVVLLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTRHEKYPLNVYMLPKTLDEKV 396

Query: 439 AALHLDHLGVKLTKLTPKQAKYI 507
           AALHLDHLGVKLTKLT  QA Y+
Sbjct: 397 AALHLDHLGVKLTKLTNTQASYL 419



 Score =  129 bits (311), Expect = 2e-30
 Identities = 60/84 (71%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   NALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNIGHFDCEID 181
           NALQAA EGF+VTTM+EAA    IFVT TG   II KEH + MKDDAIVCN+GHFDCEID
Sbjct: 251 NALQAACEGFEVTTMDEAASQANIFVTATGCSGIITKEHFMMMKDDAIVCNVGHFDCEID 310

Query: 182 VAWLDNNAKKVNIKQHVDRYELEN 253
           VAWL+ N KK  IK  VDRYEL N
Sbjct: 311 VAWLNENCKKSTIKPQVDRYELPN 334


>SB_21953| Best HMM Match : UME (HMM E-Value=6.1)
          Length = 304

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -2

Query: 187 CNINFAIKVTNVAHNCIVLHSKKMFFAYNVNISRRGDKDLTHFSGFLHSSHLK 29
           CN+N  +K++  A+N I    K+   A N+N++R    DL+  S  +H  +LK
Sbjct: 259 CNVNETLKLSKTAYNWI----KE---ADNINVNRMSGNDLSS-SSLIHLQNLK 303


>SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 427 DEEVAALHLDHLGVKLTKLTPKQAKYI 507
           DE VA LHL      LT L+  QAKY+
Sbjct: 303 DEYVAMLHLPTFDAHLTDLSDDQAKYL 329



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 510 VSREGPYKPDHYRY 551
           V++ GPYKP++YRY
Sbjct: 331 VNKNGPYKPNYYRY 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,712,712
Number of Sequences: 59808
Number of extensions: 423968
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)