Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1346
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad...   110   8e-25
At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h...   106   1e-23
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai...    30   1.7  
At2g27230.1 68415.m03272 transcription factor-related contains w...    28   5.2  
At3g55890.1 68416.m06211 yippee family protein similar to mdgl-1...    28   6.9  
At1g15740.1 68414.m01888 leucine-rich repeat family protein            28   6.9  

>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
           S-adenosyl-L-homocysteine hydrolase, putative /
           AdoHcyase, putative strong similarity to
           SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
           {Nicotiana sylvestris}; contains Pfam profile PF00670:
           S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 485

 Score =  110 bits (265), Expect = 8e-25
 Identities = 55/84 (65%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
 Frame = +1

Query: 262 IIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADT--YPIGVHTLPKKLDEE 435
           IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+ELW +  +  Y   V+ LPK LDE+
Sbjct: 387 IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEK 446

Query: 436 VAALHLDHLGVKLTKLTPKQAKYI 507
           VAALHL  LG +LTKLT  Q+ Y+
Sbjct: 447 VAALHLGKLGARLTKLTKDQSDYV 470



 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
 Frame = +2

Query: 5   ALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNIGHFDCEIDV 184
           ALQA MEG QV T+E+      IF TTTGN DII  +H+ +MK++AIVCNIGHFD EID+
Sbjct: 298 ALQALMEGLQVLTLEDVVSEADIFCTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDM 357

Query: 185 AWLDN--NAKKVNIKQHVDRYELENVTILLFLLQEDWLI 295
             L+     K++ IK   DR+   +    + +L E  L+
Sbjct: 358 LGLETYPGVKRITIKPQTDRWVFPDTNSGIIVLAEGRLM 396



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 519 EGPYKPDHYRY 551
           EGPYKP HYRY
Sbjct: 475 EGPYKPVHYRY 485


>At4g13940.1 68417.m02157 adenosylhomocysteinase /
           S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
           identical to SP|O23255 Adenosylhomocysteinase (EC
           3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
           (AdoHcyase) {Arabidopsis thaliana}; strong similarity to
           SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
           sylvestris}
          Length = 485

 Score =  106 bits (255), Expect = 1e-23
 Identities = 53/84 (63%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
 Frame = +1

Query: 262 IIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTK--ADTYPIGVHTLPKKLDEE 435
           IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+ELW +  +  Y   V+ LPK LDE+
Sbjct: 387 IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKASGKYEKKVYVLPKHLDEK 446

Query: 436 VAALHLDHLGVKLTKLTPKQAKYI 507
           VA LHL  LG +LTKL+  Q+ Y+
Sbjct: 447 VALLHLGKLGARLTKLSKDQSDYV 470



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
 Frame = +2

Query: 5   ALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNIGHFDCEIDV 184
           ALQA MEG QV T+E+      IFVTTTGN DII  +H+ +MK++AIVCNIGHFD EID+
Sbjct: 298 ALQALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDM 357

Query: 185 AWLDN--NAKKVNIKQHVDRYELENVTILLFLLQEDWLI 295
             L+     K++ IK   DR+        + +L E  L+
Sbjct: 358 LGLETYPGVKRITIKPQTDRWVFPETKAGIIVLAEGRLM 396



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 519 EGPYKPDHYRY 551
           EGPYKP HYRY
Sbjct: 475 EGPYKPPHYRY 485


>At1g44910.1 68414.m05146 FF domain-containing protein / WW
           domain-containing protein contains Pfam profiles
           PF01846: FF domain, PF00397: WW domain
          Length = 946

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +1

Query: 415 PKKLDEEVAA-----LHLDHLGVKLTKLTPKQAKYIVSLEKDLTSQIITDINLLLIY 570
           PK L E+V        H D   VK   +  ++A +  ++ +DL++Q I+DINL LIY
Sbjct: 661 PKDLFEDVTEELEKQYHEDKSYVK-DAMKSRKANFKSAISEDLSTQQISDINLKLIY 716


>At2g27230.1 68415.m03272 transcription factor-related contains weak
           similarity to anthocyanin 1 (GI:10998404) [Petunia x
           hybrida]; identical to cDNA bHLH transcription factor
           (bHLH delta gene) gi:32563001
          Length = 650

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 256 NHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQV 354
           N+ I+L    LV     TGH  ++++NSF   V
Sbjct: 75  NNRIILVGEGLVGRAAFTGHHQWILANSFNRDV 107


>At3g55890.1 68416.m06211 yippee family protein similar to mdgl-1
           [Mus musculus] GI:10441648, Yippee protein [Drosophila
           melanogaster] GI:5713279; contains Pfam profile PF03226:
           Yippee putative zinc-binding protein
          Length = 121

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 62  VGQIF-VTTTGNIDI--ICKEHLLRMKDDAIVCNIGHFDCEIDVAWLDNNAKKVNIKQHV 232
           +G++F V   GNI I  +CK HL    D  I+     F C+   A+L NN   V++ +  
Sbjct: 1   MGRVFMVDLEGNIYICKLCKTHL--STDQDIMSK--SFQCKNGRAYLFNNVVNVSVGEKE 56

Query: 233 DR 238
           DR
Sbjct: 57  DR 58


>At1g15740.1 68414.m01888 leucine-rich repeat family protein
          Length = 585

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 163 VTNVAHNCIV-LHSKKMFFAYNVNISRRGDKDLTHFSGFLHSSHLK 29
           + N+ ++C+V L       + N++  R GD+ L H SG L    L+
Sbjct: 343 MNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLE 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,530,431
Number of Sequences: 28952
Number of extensions: 293975
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)