Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1345
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    44   2e-04
05_01_0099 + 663044-665029                                             29   4.0  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    28   9.3  

>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 27/70 (38%), Positives = 33/70 (47%)
 Frame = +1

Query: 511 SFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSISRVLAERHYLLDSXXXXXXX 690
           SFPSGH+SRA L++  L    +        L  W  S S SRVL  RHY+LD        
Sbjct: 127 SFPSGHSSRAFLVAAFL----AAGGFPREALFLWAASTSASRVLLGRHYVLDVVAGACLG 182

Query: 691 XLEGLFMSLI 720
             E    SL+
Sbjct: 183 VFEAWLSSLL 192


>05_01_0099 + 663044-665029
          Length = 661

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 320 HDMISLVIENGSVKTLEQLFLVSVNKCLRNLNIILQNFFSTWVEFDAFSLFLL 162
           + MI+    +G V   ++LF +  +K L   NII+  +    ++ +A  LFLL
Sbjct: 313 NSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLL 365


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 24/97 (24%), Positives = 47/97 (48%)
 Frame = -3

Query: 308 SLVIENGSVKTLEQLFLVSVNKCLRNLNIILQNFFSTWVEFDAFSLFLLTYP*Y*PIFST 129
           +L  ++ S K + Q    S+ + L+   I   +  + W EF+ F L  L +    P F  
Sbjct: 451 ALSSDDDSPKVVWQPVYTSLIQALKTFMIAASSSSAAWSEFEVFLLENLFH----PHFLC 506

Query: 128 TNVLIVLFHSCSFKFYSFTIDT*TYIEFKIYLMYESV 18
             +L  L+  C F  Y+   +T TY+  +++L+ +++
Sbjct: 507 LEILTELW--CFFMHYA-EAETSTYLINQLFLLLKTL 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,711
Number of Sequences: 37544
Number of extensions: 408880
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)