Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1345
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       39   0.004
SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)                28   9.5  

>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = +1

Query: 511 SFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSISRVLAERHYLLDSXXXXXXX 690
           SFPSGH++RA +++ I     + S+     +  W +++++SRV+  RH++ D        
Sbjct: 134 SFPSGHSTRAAMMAGICSVL-TPSVFGKALVYTWALAIAMSRVMLGRHHVSDVVCGALIG 192

Query: 691 XLEGLFMSLIW 723
             + L +  IW
Sbjct: 193 WAQYLLIVKIW 203



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
 Frame = +2

Query: 251 QTLKITALKS---LRNHSQLLEISCHGIVWLAGWLTFIWLFNSKDLYQLQVNMXXXXXXX 421
           Q+L I A K    +R    +LEIS HG+ W+ G L  I+L+   +  Q+ +N        
Sbjct: 43  QSLSICATKDASFMRFVLIILEISGHGVPWITGSLLAIYLYRGLE-QQIALNFLLALIID 101

Query: 422 XXXXXXXXXFVRRRRPV--PMNKLMEVGPD-----KSHS-HPDMQAGLCS 547
                      +R RPV    +  + V  D       HS    M AG+CS
Sbjct: 102 LAVVGTTKVLFKRSRPVYNAQDMFVTVSVDNFSFPSGHSTRAAMMAGICS 151


>SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 635 GYWLNVTIYWTA*EVWVLEFLKVSSCPSYGCPK 733
           GYW  V I +T  E+W L  +K    P+Y   K
Sbjct: 227 GYWEVVPISYTMVEIWELLKIKFFGTPNYARAK 259


>SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)
          Length = 610

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 205 KKFCSMMFKLRRHLLTDTKNNCSKVFTEPFSI 300
           ++ C  + +L+RH++TD + NC       F +
Sbjct: 213 QRLCDEIIRLQRHVITDAQINCPAELDSLFEV 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,566,578
Number of Sequences: 59808
Number of extensions: 469888
Number of successful extensions: 1070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)