Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1345
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic mul...    28   8.3  
AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell...    28   8.3  

>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/70 (32%), Positives = 37/70 (52%)
 Frame = +1

Query: 511 SFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSVSISRVLAERHYLLDSXXXXXXX 690
           SFPSGH+SRA ++  ++ Y  + + ++  P + + + V +SRV   RHY+ D        
Sbjct: 107 SFPSGHSSRAAML-LVMAY--NAAPLYVIPFIPFPLVVGLSRVALGRHYITDVLAGIFIG 163

Query: 691 XLEGLFMSLI 720
            LE   M  I
Sbjct: 164 YLEARLMLTI 173


>AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic
           multivulva protein LIN-35 Rb protein.
          Length = 961

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 136 KIG*YYGYVRRNREKASNSTHVEKKFCSMMFKLRRHLLTDTKN 264
           KI  Y  Y+RR +E  + S  + KKFC +  K+   +   ++N
Sbjct: 231 KIRRYQEYIRRIQEGLAVSCVIFKKFCRIFCKIFEEIKVGSEN 273


>AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell
           lineage protein 35 protein.
          Length = 961

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 136 KIG*YYGYVRRNREKASNSTHVEKKFCSMMFKLRRHLLTDTKN 264
           KI  Y  Y+RR +E  + S  + KKFC +  K+   +   ++N
Sbjct: 231 KIRRYQEYIRRIQEGLAVSCVIFKKFCRIFCKIFEEIKVGSEN 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,920,672
Number of Sequences: 27780
Number of extensions: 381028
Number of successful extensions: 800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)