Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1342
         (1027 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   2.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   2.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   2.2  
AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    23   2.9  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    23   2.9  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   8.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 430 TRPSGRWCEXPSAGLC 477
           ++ S + CE PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 430 TRPSGRWCEXPSAGLC 477
           ++ S + CE PSAGLC
Sbjct: 45  SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 430 TRPSGRWCEXPSAGLC 477
           ++ S + CE PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 785 GYPLTIPHNITXP 823
           GYP+ +PH +  P
Sbjct: 96  GYPMDVPHGMGSP 108


>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 719 GIVWVPSSKFRNHGQAVFLCEIG 787
           G+  VPSS+F  +G+A+ L  +G
Sbjct: 56  GLPEVPSSRFLMNGKALCLMSLG 78


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 719 GIVWVPSSKFRNHGQAVFLCEIG 787
           G+  VPSS+F  +G+A+ L  +G
Sbjct: 56  GLPEVPSSRFLMNGKALCLMSLG 78


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 785 GYPLTIPHNITXP 823
           GYP+ +PH +  P
Sbjct: 96  GYPMDVPHGMGSP 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,138
Number of Sequences: 336
Number of extensions: 4613
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29176451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)