Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1342
         (1027 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   4.3  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    27   5.7  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 24/100 (24%), Positives = 44/100 (44%)
 Frame = -1

Query: 622 GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSLGWLRP*RRSGIIPRMVXRTTG 443
           G++ R+  +  E  L + H   P  S  +T S  +     W     +S I   +  R + 
Sbjct: 92  GIKDRIPVYYEEEELPEPHVTSPTKSEFATTSTCMK----WSSKTTKSEI--EVEWRDSY 145

Query: 442 RSAECMNQMSETAVPLVLSSITIATTSHQ*GKTNLSHDGL 323
             A C+ ++ ++  P   S +T  ++SHQ G ++ S   L
Sbjct: 146 LDANCIKEIIDSRRPSFASLLTKKSSSHQ-GSSHSSQPSL 184


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 539 LHSEHILAGFARLASALEAFRHNPADGXSHHRPLGRVHEPNVRNCGSSRTEQYYYRNDK 363
           +HS+  +   A ++SAL      P  G ++ RPL   HE  V   G+ +   YY  +++
Sbjct: 51  VHSKRTVLTSADISSALRTLNVEPLYGFNNSRPL-EFHEAAV---GAGQNSLYYLDDEE 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,939,330
Number of Sequences: 5004
Number of extensions: 78227
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)