Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1342
         (1027 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0203 - 1610124-1610154,1610244-1610419,1610490-1611124,161...    30   2.6  
02_01_0709 + 5315119-5315194,5316068-5316303,5316426-5316578,531...    30   2.6  
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590...    30   3.4  
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    29   4.5  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.5  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    29   6.0  

>03_01_0203 -
           1610124-1610154,1610244-1610419,1610490-1611124,
           1611201-1611408
          Length = 349

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 605 DATSKPIWIAEIDA-IGFFLNTCITAPKVRI*LSSMSGLGIVWVPS---SKFRNHGQAVF 772
           DA S   +  E+D   G F       P  R  LS   G GIV +P    S F+ +G+  F
Sbjct: 266 DAASAARFSGELDPETGKFAGLTPDEPGER--LSRDDGDGIVTLPKQLWSSFKENGKDEF 323

Query: 773 LCEIGYPL 796
           +CE+G+ L
Sbjct: 324 VCEVGWVL 331


>02_01_0709 +
           5315119-5315194,5316068-5316303,5316426-5316578,
           5317011-5317091,5317201-5317255,5317710-5318008,
           5318053-5318064
          Length = 303

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = +3

Query: 432 SAERPVVRXTIRGIMPERL*GRS-QPSESGKD-MLTVEPRE--SGGSKQCDFTSRVSHSK 599
           S++RP       G  P RL   + QPS SGKD    V  +E   GG K     S  + S+
Sbjct: 67  SSKRPPAAAAAGG-QPSRLNNPADQPSASGKDGKAAVVKKEGGGGGGKHHGGASSAAASE 125

Query: 600 RETRRRSPFGSRRSMLSVFFLTRASRLRKSGY 695
            E  +     + R +       R SRLRK  Y
Sbjct: 126 HEGPKTPDAKTLRRLAQNREAARKSRLRKKAY 157


>01_05_0706 +
           24457148-24458031,24458621-24458822,24458896-24459080,
           24459170-24459503,24459614-24459818,24460022-24460128,
           24460220-24460381
          Length = 692

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 629 SKWASTSRLAF*MRNATSKVTLFRASRLSGLHSEHILAGFARLASAL----EAFRHNPAD 462
           ++W    + A  +R+    V L   S     +    LAG  RLA AL    EA R +PA+
Sbjct: 223 NEWYKKGKHAEALRHYDRAVALCPESAACRGNRAAALAGLGRLADALRDCEEAVRLDPAN 282

Query: 461 GXSHHRPLG 435
           G +H R  G
Sbjct: 283 GRAHSRLAG 291


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 495 RSQPSESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 632
           R+  + +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 429 RAAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 142 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVGSSI 258
           YK F A G  RKV  GIT  + PS+  D+AF S  +G ++
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALGIAL 672


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 505 LANPARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 621
           +A+ AR C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 445 MAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,775,012
Number of Sequences: 37544
Number of extensions: 551970
Number of successful extensions: 1280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3012716568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)