Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1342
         (1027 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    31   1.3  
AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    31   1.8  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81062-13|CAB82210.1|  333|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    29   7.1  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    29   7.1  

>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 556 PPDSRGSTVSISLPDSLGWLRP*RRSGIIPRMVXRTTGRSAECMNQMSE 410
           PP ++ ST + SL  S+   RP  +  I+P  V     R+A+   +M+E
Sbjct: 119 PPSTQRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNAQLEREMAE 167


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 556 PPDSRGSTVSISLPDSLGWLRP*RRSGIIPRMVXRTTGRSAECMNQMSE 410
           PP ++ ST + SL  S+   RP  +  I+P  V     R+A+   +M+E
Sbjct: 119 PPSTQRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNAQLEREMAE 167


>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +1

Query: 400 EPQFRTFGSCTRPSGRWCEXPSAGLCLNASKAEASLANPARICSLWSPESR-EALNNVTL 576
           EP ++ F    RPSG WC    AG   NA KA+A  +  A   +L   +++ EAL   T 
Sbjct: 41  EPGWKFFN---RPSGGWCMRVFAG--FNAKKADAEKSCQAVGSTLSGIQNKNEALYIQTA 95

Query: 577 LVAFRIQNARRDVEAHLDRGDRCYR 651
           L+A +I  +   V   + R  +C +
Sbjct: 96  LLA-QIPQSSGSVWIGIQRTQKCLK 119


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 433 RPSGRWCEXPSAGLCLNASKAEASLANPARICSLWSPESREALNNVT 573
           RPSG WC     GL L  ++ EAS    A    L   +++  LN +T
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEASARCAAEGAVLSGVQNQAELNAMT 81


>Z81062-13|CAB82210.1|  333|Caenorhabditis elegans Hypothetical
           protein F15A4.13 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +2

Query: 680 PKVRI*LSSMSGLGIVWVPSSKFRNHGQAVFLCEIGYPLTIPHNITXPEA-*KCKSPGVX 856
           PK+ I   S  G    W P   FR      F C I + L I  +   PE+   CK   + 
Sbjct: 127 PKIDIISFSGKGFNRTWFPRDLFRIFNAQSFYCVIDFILKILRSFQYPESLTTCKGKSLG 186

Query: 857 NEVS*TPHLIALRSI 901
            +   T  ++  +S+
Sbjct: 187 RKPLNTIFILNFKSV 201


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 536 HSEHILAGFARLASALEAFRHNPADGXSHHRP 441
           +S+HI      +   ++ FRH P+ G + H P
Sbjct: 279 YSQHIQRQIDEVERKIDEFRHGPSSGPASHHP 310


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 536 HSEHILAGFARLASALEAFRHNPADGXSHHRP 441
           +S+HI      +   ++ FRH P+ G + H P
Sbjct: 279 YSQHIQRQIDEVERKIDEFRHGPSSGPASHHP 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,057,082
Number of Sequences: 27780
Number of extensions: 446405
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2709719642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)