Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1341
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 29 0.63
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 27 1.9
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 2.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 2.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 3.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 5.8
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 26 5.8
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 26 5.8
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 5.8
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 26 5.8
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 25 7.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 7.7
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 7.7
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 7.7
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 318 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 446
AK G ++ VGG ++ E EK + ++++ A A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 421 LLSLIPECCWLNNMVSMELTSP 486
L +L+PE W NNM EL +P
Sbjct: 227 LQALLPEVAWKNNMNQWELLNP 248
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 217 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 101
S+ GC +TE+ T+ C E SCC S K CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 113 FVTTTAGAMSENLKPACCRWTSIPLC--RSAPTCCTAMRLSSLTPISWCLKRE 265
FV T A +K A T I C RS P C ++RL + PI W +E
Sbjct: 242 FVETPTAA---EVKAAETSGTKIVKCGHRSCPICWDSIRLRDVHPIRWVEDKE 291
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 484 ARSIPSKPYC--SANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 326
A S PS P S +STP + ++ + + Y +SVS+ PP ++ V PG
Sbjct: 277 ATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAY--SASVSSQPPLTHSYVHPG 329
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 242 ISWCLKREPGHRPNTRQ 292
I+ CL+ +P HRPN Q
Sbjct: 303 IATCLQEQPSHRPNIYQ 319
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 276 DRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSG 440
D+ D+ + TS + + +GG TEE + YN+ +E +A T +IN G
Sbjct: 320 DKFVDSLNSWTSELTHCKNIILTPHIGGS--TEEAQ-YNIGIEVSEALTRYINEG 371
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 251 CLKREPGHRPNTRQL 295
CL+REP RP+ R+L
Sbjct: 320 CLQREPNKRPSAREL 334
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 457 CSANSTPELMKAVRACCDSSRRLYFSGS 374
C NST + M V C D RLY G+
Sbjct: 652 CEFNSTRKRMSIVFRCPDGKIRLYVKGA 679
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 479 PRLAVPKS*AKKIRSTWGSLWHGIKKTFGTTPV-DEKESEHREGFTA 616
P LAVPKS + I +G H TF V EK+ + +G A
Sbjct: 176 PELAVPKSQERYIPRIFGFKVHSYSATFKKQDVYKEKQKKRLQGAEA 222
>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 400 WNRSKPVLLSLIPECCWLNNMVSMELTSPGSSQEL 504
W R + LSL+ W+N +VS LT+P S L
Sbjct: 270 WKRDHRLELSLLDNKRWVNILVS-HLTAPESHASL 303
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 111 TLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAV 212
TLL++Q+ LC S A+ S S V+ PL +
Sbjct: 1045 TLLIKQENLCNNGSLLFEAIEQNSLSKVMIPLNI 1078
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 339 VLLSVGGDADTEEPEKYNLLLESQQARTAFINS 437
++ VGG+AD + E +LL + +A +N+
Sbjct: 348 IVPQVGGEADVDPKEYMEMLLSTYKASKELVNT 380
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 454 NNMVSM-ELTSPGSSQELSQEDPLDLGI 534
NN SM E+T P Q L+QEDP+ + I
Sbjct: 617 NNYESMCEITLPELLQVLNQEDPIMVNI 644
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,872
Number of Sequences: 5004
Number of extensions: 57317
Number of successful extensions: 159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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