Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1341
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 51 1e-06
04_03_0649 - 18402976-18403220,18403305-18404499 40 0.001
10_08_0009 + 14075929-14076789 33 0.21
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 30 2.0
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 29 3.4
02_05_1096 + 34089572-34089880,34090405-34090470,34090723-340909... 29 3.4
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 28 6.0
05_07_0289 + 29004842-29005213,29005318-29005605,29005707-290058... 28 7.9
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +3
Query: 306 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 473
+S+K+ G V +LS+G D E+ ++ + + R AFINS + LA GFDG
Sbjct: 98 SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157
Query: 474 IDLAWQFP 497
+DLAW+FP
Sbjct: 158 LDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 414 ARTAFINSGVLLAEQYGFDGIDLAWQFP 497
+R AFI + V +A + GFDG+D+AW+FP
Sbjct: 143 SRAAFIGAAVKVARENGFDGLDVAWRFP 170
>10_08_0009 + 14075929-14076789
Length = 286
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 300 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL----LAEQYGF 467
A+ + KA +P L+V+L++GGD T + N + A++ + L + YG
Sbjct: 70 AVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127
Query: 468 DGIDLAWQ 491
DG+D+ ++
Sbjct: 128 DGVDVDYE 135
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -2
Query: 381 LVLRYQRRHXXXXXX*DQGTWLSSW*SHGSCRVFGLCPGSRLRHQLIGVRLDNR 220
L + RRH D+ W S H R+ G C SRLR +L G+R R
Sbjct: 309 LFAEWSRRHHRWRGLRDRRQWQS----HTRGRLCGCCAVSRLRARLSGMRRGRR 358
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 373 KNQKNITFCWNRSKPVLLSLIPECCWLNNMVSMELTSPGSSQELSQED 516
K + + FCW+ + P++ +PE N + L +EL Q++
Sbjct: 361 KVENVVDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPGKEELRQKN 408
>02_05_1096 +
34089572-34089880,34090405-34090470,34090723-34090903,
34091164-34091360,34091484-34091534,34091609-34091700,
34092234-34092246,34092278-34092349,34092970-34093048,
34093092-34093174,34093568-34093711
Length = 428
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -1
Query: 565 AECLLNSMPKRSPGRADLLGLTLGNCQAR-SIPSKPYCSANSTPELMKAVRACCDSSRRL 389
A L ++ P S A LG + R S+PYC+A + P AV A +RR
Sbjct: 2 AAALCSASPAISAAAAAALGAAARRLRVRVRAASRPYCAAPAPPRAAAAVGAQSWRARR- 60
Query: 388 YFSGSSVSAS 359
F+ S+ S +
Sbjct: 61 RFAASAASTT 70
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 598 VLRFLLIDWRGAECLLNSMPKRSPGRADLLGLTLGNCQ 485
V R ++DW + ++ ++ R G+A ++G GNC+
Sbjct: 446 VRRCQVVDWADTKEIITAVCYRPDGKAAVVGTITGNCR 483
>05_07_0289 +
29004842-29005213,29005318-29005605,29005707-29005853,
29005939-29006175,29006261-29006524,29006609-29006725,
29006991-29007042,29007903-29008303,29008380-29008598,
29008692-29008925
Length = 776
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 538 KRSPGRADLLGLTLGNCQARSIPSKPYCSANSTP 437
+RSP R+ + L+LG R PS CSA ++P
Sbjct: 18 RRSPRRSAPVVLSLGGGPRRRTPSSTSCSALASP 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,478,299
Number of Sequences: 37544
Number of extensions: 415501
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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