Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1341
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 59 4e-09
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 56 4e-08
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 52 3e-07
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 39 0.003
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 29 2.7
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 3.5
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 29 4.6
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 29 4.6
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09) 28 6.1
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 6.1
SB_27790| Best HMM Match : UPAR_LY6 (HMM E-Value=0.22) 28 8.1
SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +3
Query: 294 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 473
Y+ LK K PGL LL+VGG ++ ++ + +R FI+S + + Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246
Query: 474 IDLAWQFPRVKPRRSARPGDR 536
DL W++P R + PGD+
Sbjct: 247 FDLDWEYP--GNRVGSDPGDK 265
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 58.0 bits (134), Expect = 7e-09
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 294 YRAITSLKAKYPGLTVLLSVGGDADTEEP-EKYNLLLESQQARTAFINSGVLLAEQYGFD 470
Y+ I LK K P L LL+VGG P ++ ++ S+ RT FI+S + L+++Y FD
Sbjct: 455 YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFD 514
Query: 471 GIDLAWQFPRVKPRRSARPGDR 536
G DL W++P R ++ P D+
Sbjct: 515 GFDLDWEYP--ASRGNSPPQDK 534
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +1
Query: 112 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAVIQPDTYKL 249
+CY+ + + R + LP D+DP L CTH++Y +A I P T K+
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKI 444
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 267 LDI--DRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSG 440
LDI + H+ Y+ I +LK P L ++VGG E+ ++ ++ +++ R FI S
Sbjct: 67 LDIYEENDHELYQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSA 126
Query: 441 VLLAEQYGFDGIDLAWQFPRVK 506
+ +GFDG+DL W++P ++
Sbjct: 127 IETLRTHGFDGLDLDWEYPGMR 148
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +3
Query: 288 DNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGF 467
D Y+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + GF
Sbjct: 461 DLYKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGF 520
Query: 468 DGIDLAWQFPRVK 506
DG+DL W++P ++
Sbjct: 521 DGLDLDWEYPGMR 533
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 115 CYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAVIQPDTYKL 249
CYY + S R P D+DP L CTH+L+ +A + T+KL
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKL 67
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 112 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAVIQPDTY 243
+CYY + S R P D+DP L CTH+++ ++ + T+
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTH 450
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +3
Query: 294 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 473
Y +LK K P L LL+VGG ++ ++++ R FI+S + + +GFDG
Sbjct: 75 YPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGFDG 134
Query: 474 IDLAWQFPRVKPRRSARPGDRF 539
+DL W++P + RF
Sbjct: 135 LDLDWEYPATRGGSPPEDKQRF 156
Score = 34.3 bits (75), Expect = 0.093
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 112 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAVI 228
+CY+ + S R+ +A+ P D+ PA CTHL+Y +A I
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKI 58
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 294 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 473
Y+ + LK+ + LL+VGG P + ++ + R FI+ +L + FDG
Sbjct: 78 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 134
Query: 474 IDLAWQFP 497
+DL W++P
Sbjct: 135 LDLDWEYP 142
Score = 35.1 bits (77), Expect = 0.053
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +1
Query: 112 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAVIQPDTYKL 249
+CYY + + R A+ P ++DP+L CTH++Y +A + D KL
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKL 67
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 294 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 473
Y+ + LK+ + LL+VGG P + ++ + R FI+ +L + FDG
Sbjct: 2 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58
Query: 474 IDLAWQFP 497
+DL W++P
Sbjct: 59 LDLDWEYP 66
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 472 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 344
P P C A S+ E + ++R D RR+ F G V PP N
Sbjct: 384 PDIPICVAASSSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 428
>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1565
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/83 (32%), Positives = 35/83 (42%)
Frame = +3
Query: 360 DADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVKPRRSARPGDRF 539
D D E PE+ L+L + AF VL AE G PR K + + D+F
Sbjct: 1078 DHDFEFPEE-RLVLGKSLGQGAF--GQVLRAEAIGMSAFK-----PRDKAPEAVKMRDKF 1129
Query: 540 GMELRRHSAPRQSMRRNLSTVKV 608
R+ A SMR +TV V
Sbjct: 1130 RRSFRKKGAEYNSMRSTKTTVAV 1152
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 472 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 344
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 472 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 344
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 472 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 344
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWISDDRGRRVDFKGKPVRLCPPPAN 227
>SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)
Length = 836
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 251 CLKREPGHRPNTRQLPCDHQLESQVPWSH 337
C K HRPN Q C E V W H
Sbjct: 499 CKKCSEKHRPNLAQTECVAYYEDYVHWEH 527
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 288 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 395
DNY + + YP T V+LS GDA T +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150
>SB_27790| Best HMM Match : UPAR_LY6 (HMM E-Value=0.22)
Length = 150
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 559 CLLNSMPKRSPGRADLLGLTLGNCQARSIPSKPYC-SANSTPELMKAVRACC 407
CL M + PG ++ + NC A + C SAN + L K +CC
Sbjct: 22 CLTIVMETKVPGSGHVMHQEMRNCSAEHYCNDMICASANMSGLLTKCSVSCC 73
>SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Frame = +2
Query: 182 PLCRSAPTCCTA--MRLSSLTPISWCL--------KREPGHRPNTRQLPCDHQLESQVP 328
P CR+ T LS+ T +S CL + P HRP R LP D + E +P
Sbjct: 52 PSCRALETSSLIEFFLLSAKTIVSSCLATLLRLSPRPRPRHRPAQRPLPADRRSEPLIP 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,243,781
Number of Sequences: 59808
Number of extensions: 474939
Number of successful extensions: 1358
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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