Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1341
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 343 NTVRPGYLAFKLVIAR*LSCVRS 275
           N  RP YLA K  +     C+RS
Sbjct: 155 NRNRPAYLASKCALTTLTDCLRS 177


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 566 TTPVDEKESEHREGFTALV 622
           T P+D+  S+  EGF A++
Sbjct: 150 TNPLDDSISQANEGFCAVI 168


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 566 TTPVDEKESEHREGFTALV 622
           T P+D+  S+  EGF A++
Sbjct: 145 TNPLDDSISQANEGFCAVI 163


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 612  VKPSRCSDSFSSTGVVPNVFL 550
            V  + CSD FS  GV+ ++ +
Sbjct: 971  VNETVCSDYFSQGGVIESIMV 991


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,584
Number of Sequences: 438
Number of extensions: 4325
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)