Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1340
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   3.2  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   3.2  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   3.2  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   3.2  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   3.2  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 484  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 371
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 501 LTR*NEHNARTSTRPGTGRIRFPSKPDT 418
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 501 LTR*NEHNARTSTRPGTGRIRFPSKPDT 418
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 501 LTR*NEHNARTSTRPGTGRIRFPSKPDT 418
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 501 LTR*NEHNARTSTRPGTGRIRFPSKPDT 418
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 469 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 314
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -1

Query: 251 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 123
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 235 IRTPPQMRCSSRSEPYLPSIGFHGT 161
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 211 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 38
           C++   P+L  I    T+ +RQ   + P+L +A   H       + FK E     T+P
Sbjct: 80  CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 199  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 47
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 199  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 47
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253


>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 199  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 47
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 199  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 47
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 199  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 47
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253


>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 199  SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 47
            S+  LP+ GF    T   K   +P+ S A +G      RT  F  EGT  E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 459 PGTGRIRFPSKPDTPRSSEPILIPKLRI 376
           P    ++  SKP TP  + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,543
Number of Sequences: 27780
Number of extensions: 312338
Number of successful extensions: 1050
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)