Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1339
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    95   6e-21
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   5.4  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    26   5.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.5  
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 45/78 (57%), Positives = 55/78 (70%)
 Frame = +1

Query: 265 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 444
           K++A YIWIDG   HLR K  TL+  P +   L +WNFDGSST QA G+NSDT L P A+
Sbjct: 27  KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSSTGQAPGNNSDTLLKPVAM 85

Query: 445 YKDPFRRGNHILVMCDTY 498
           Y DPFRRG++ILV+   Y
Sbjct: 86  YNDPFRRGDNILVLAACY 103



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = +3

Query: 513 PTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRPFGWPR 644
           P   N+R +C +  +K  D E WFGIEQEY +LD   RPFGWP+
Sbjct: 109 PNGFNHRDACAKLLEKHADKETWFGIEQEYTMLDYYDRPFGWPK 152


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 152 KIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPRRLTRFSPPTF 286
           K++DNP  +     T+S  +  SK L +R    P     FS P F
Sbjct: 657 KLQDNPSSIYFAKQTDSRQSSASKLLYARL-QAPEHARNFSSPPF 700


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 385 SSTNQADGHNSDTYLVPRAI 444
           + T   +G NSDTY++PR +
Sbjct: 219 TETRILNGKNSDTYIIPRPL 238


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 233 SVAFWTALRSGSWLKPAPIESSDYLLFWYAL 141
           S+ FW AL SG+ L    + SS   L+ YA+
Sbjct: 878 SIHFWIALWSGNSLFSLKLPSSFSFLWGYAI 908


>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 12  EAIETFYAPTKPFVNTFSRNIQHSHRG 92
           E  +T   P K F+N   RN+Q  +RG
Sbjct: 36  EKEKTKLRPNKVFLNNMVRNVQSHNRG 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,725
Number of Sequences: 5004
Number of extensions: 61249
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)