Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1339
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 108 3e-24
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 106 2e-23
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 100 9e-22
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 78 5e-15
01_01_0307 + 2513678-2513772,2514064-2514682 29 3.2
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562... 28 7.4
05_01_0183 - 1289608-1289643,1289965-1290026,1290113-1290162,129... 27 9.8
05_01_0015 + 117238-117996 27 9.8
04_01_0505 + 6599181-6599249,6599537-6599632,6599931-6599962,660... 27 9.8
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 108 bits (260), Expect = 3e-24
Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Frame = +1
Query: 250 STP-ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTY 426
+TP DKI+A YIW+ G+G LR K RT++ + P +LP WN+DGSST QA G +S+
Sbjct: 811 TTPFTDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVI 870
Query: 427 LVPRAIYKDPFRRGNHILVMCDTY 498
L P+AI+KDPFR GN+ILVMCDTY
Sbjct: 871 LYPQAIFKDPFRGGNNILVMCDTY 894
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 513 PTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLR-PFGWP 641
PT NR + + K PWFGIEQEY LL D+ P GWP
Sbjct: 902 PTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWP 945
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 106 bits (254), Expect = 2e-23
Identities = 49/83 (59%), Positives = 59/83 (71%)
Frame = +1
Query: 250 STPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 429
S +KI+A YIWI GSG LR K RTL+ P LP WN+DGSST QA G +S+ L
Sbjct: 13 SDTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVIL 72
Query: 430 VPRAIYKDPFRRGNHILVMCDTY 498
P+AI+KDPFR+GN+ILVMCD Y
Sbjct: 73 YPQAIFKDPFRKGNNILVMCDCY 95
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 510 EPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLR-PFGWP 641
EP +N R + + + + +EPW+GIEQEY LL D+ P GWP
Sbjct: 100 EPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWP 146
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 100 bits (240), Expect = 9e-22
Identities = 46/80 (57%), Positives = 57/80 (71%)
Frame = +1
Query: 259 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPR 438
+DKI+A YIW+ GSG LR K RT+ LP WN+DGSST QA G +S+ L P+
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 439 AIYKDPFRRGNHILVMCDTY 498
AI+KDPFRRG++ILVMCD Y
Sbjct: 76 AIFKDPFRRGDNILVMCDCY 95
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 504 QQEPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLR-PFGWP 641
Q EP +N R S + + + PW+GIEQEY LL D+ P GWP
Sbjct: 98 QGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWP 146
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 78.2 bits (184), Expect = 5e-15
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = +1
Query: 307 HLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVM 486
HL+ + TL+ P LP WNFDGSST QA G +S+ L P+AI++DPFR+G +ILVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 487 CDTYKYN 507
CD Y N
Sbjct: 119 CDCYAPN 125
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 510 EPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLR-PFGWP 641
EP +NNR + + K +EPW+GIEQEY LL + P GWP
Sbjct: 127 EPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWP 173
>01_01_0307 + 2513678-2513772,2514064-2514682
Length = 237
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 157 YFGMRCISHFETGKAR--LCLEMFPRCEC*ILRENV 56
Y CISHF KAR LC E +P C I+ + V
Sbjct: 195 YRTQNCISHFLANKARAKLCTEFWPDETCNIISQFV 230
>01_05_0714 +
24555494-24555637,24555884-24556071,24556195-24556280,
24556359-24556461,24556798-24557000,24557077-24557681,
24557784-24557918,24558040-24558067,24559517-24559596,
24559873-24559975,24560553-24560635,24560915-24561017,
24561596-24561720,24562001-24562103,24562647-24562726,
24563322-24563429,24563521-24563565
Length = 773
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 3 PPREAIETFYAPTKPFVNTFSRNIQHSHRGNISR 104
PP + T + P P +T+ +N HRGN +
Sbjct: 630 PPEDTDNTVHTPEIPPEDTYPQNQSEIHRGNTEK 663
>05_01_0183 -
1289608-1289643,1289965-1290026,1290113-1290162,
1290260-1290357,1290547-1290927,1291191-1291697,
1291922-1291996,1292095-1292286,1292599-1292658
Length = 486
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 362 RSLGALGMKFKVRSLHLRCSPEPSIQM*VARILSAGVEDHCIDSVAFWTALRSG 201
R L + + F + +HL C PE I + R+L A D+ +D + W ++ G
Sbjct: 256 RKLKQVDLDFIYKLIHLLCLPEMKIFLDTTRLL-ADNTDNIVDEL--WNYIKEG 306
>05_01_0015 + 117238-117996
Length = 252
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 157 YFGMRCISHFETGKARLCLEMFPRCEC*ILRENVFTKGFV 38
YFG+ SH AR+ LE+ RC +L E+ G +
Sbjct: 146 YFGIGKQSHRSLDDARMNLEVLKRCATLLLLESTLPPGML 185
>04_01_0505 +
6599181-6599249,6599537-6599632,6599931-6599962,
6601191-6601428,6601852-6601905,6601923-6602130,
6602353-6602590,6602788-6602962,6603074-6603442
Length = 492
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 17 DRNILRSDKTFRKYVFAQYSTLASREHFKT*SCLTCFKMADTAHTKIEDN 166
D + R+ K+ R + +Y +LAS + + SC+ F ++D + EDN
Sbjct: 61 DNDTTRNFKSIRLWKCNKYQSLASASYVPSHSCVYIFFLSDNTGNE-EDN 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,340,302
Number of Sequences: 37544
Number of extensions: 424262
Number of successful extensions: 1012
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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