Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1339
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 116 1e-26
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 116 1e-26
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 111 4e-25
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 109 2e-24
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 107 9e-24
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 96 2e-20
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 116 bits (279), Expect = 1e-26
Identities = 54/105 (51%), Positives = 66/105 (62%)
Frame = +1
Query: 274 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 453
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89
Query: 454 PFRRGNHILVMCDTYKYNRSQQRATIASVVKKLTTNARMMSPGLG 588
PFR+G + LVMC+TY + K++ A P G
Sbjct: 90 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFG 134
Score = 64.9 bits (151), Expect = 5e-11
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 504 QQEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRPFGWPR 644
+++PT +N R C+E +K D PWFG+EQEY LLD D PFGWP+
Sbjct: 107 KKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPFGWPK 153
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 116 bits (279), Expect = 1e-26
Identities = 54/105 (51%), Positives = 66/105 (62%)
Frame = +1
Query: 274 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 453
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92
Query: 454 PFRRGNHILVMCDTYKYNRSQQRATIASVVKKLTTNARMMSPGLG 588
PFR+G + LVMC+TY + K++ A P G
Sbjct: 93 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFG 137
Score = 64.9 bits (151), Expect = 5e-11
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 504 QQEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRPFGWPR 644
+++PT +N R C+E +K D PWFG+EQEY LLD D PFGWP+
Sbjct: 110 KKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPFGWPK 156
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 111 bits (267), Expect = 4e-25
Identities = 53/101 (52%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
Frame = +1
Query: 265 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 444
K ATY+WIDG+GEHLR K RT+N P+ + PIWN+DGSST QADG NSD YL P A+
Sbjct: 29 KCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSSTGQADGLNSDRYLRPVAV 88
Query: 445 YKDPFRRGNHILVMCDT----YKYNRSQQRATIASVVKKLT 555
+ DPF G ++LVMCDT K + R A ++KK++
Sbjct: 89 FPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKKVS 129
Score = 62.1 bits (144), Expect = 3e-10
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +3
Query: 504 QQEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRPFGWPR 644
+ +PT +N+R C E K D +PWFG+EQEY+++D D P GWP+
Sbjct: 109 EMKPTATNHRQMCAELMKKVSDQQPWFGMEQEYLIVDRDEHPLGWPK 155
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 109 bits (261), Expect = 2e-24
Identities = 50/100 (50%), Positives = 68/100 (68%), Gaps = 4/100 (4%)
Frame = +1
Query: 265 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 444
K ATY+WIDG+GE LR K RT N P+ + PIWN+DGSST QA+G NSD YL P A+
Sbjct: 29 KCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSSTGQAEGLNSDRYLRPVAV 88
Query: 445 YKDPFRRGNHILVMC----DTYKYNRSQQRATIASVVKKL 552
+ DPF +G+++LVMC +T K + R A+++KK+
Sbjct: 89 FPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKKV 128
Score = 56.4 bits (130), Expect = 2e-08
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 510 EPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRPFGWPR 644
+PT +N+R +C K + PWFG+EQEY+++D D P GWP+
Sbjct: 111 KPTATNHRQNCAAIMKKVAEHHPWFGMEQEYLIVDRDEHPLGWPK 155
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 107 bits (256), Expect = 9e-24
Identities = 51/88 (57%), Positives = 62/88 (70%)
Frame = +1
Query: 265 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 444
KI ATY+WIDG+GE+LR K RT + +PK +D PIWN+DGSST QA G +SD YL P A
Sbjct: 29 KIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSSTGQAKGRDSDRYLRPVAA 88
Query: 445 YKDPFRRGNHILVMCDTYKYNRSQQRAT 528
Y DPF G + LVMCDT + + Q AT
Sbjct: 89 YPDPFLGGGNKLVMCDTLDH-QMQPTAT 115
Score = 60.5 bits (140), Expect = 1e-09
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +3
Query: 504 QQEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRPFGWPR 644
Q +PT +++R +C E + +D PWFG+EQEY+++D D P GWP+
Sbjct: 109 QMQPTATSHRQACAEIMHEIRDTRPWFGMEQEYLIVDRDEHPLGWPK 155
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 96.3 bits (229), Expect = 2e-20
Identities = 39/76 (51%), Positives = 55/76 (72%)
Frame = +1
Query: 280 YIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPF 459
YIWID + E++R K +T +F PK P DLPIWNFDG+ST Q+ G SD Y+ P A+Y+DPF
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94
Query: 460 RRGNHILVMCDTYKYN 507
R G + + +C+T ++
Sbjct: 95 RPGPNKIALCETLTHD 110
Score = 56.8 bits (131), Expect = 1e-08
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 510 EPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRPFGWP 641
+P +N R C + +K KD EPWFG+EQE+ LL +D P+ WP
Sbjct: 112 KPHPTNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNWP 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,252,098
Number of Sequences: 27780
Number of extensions: 360038
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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