Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1339
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 93  SLDASVEYCAKTYLRKVLS 37
           ++D + ++C KT +RKV+S
Sbjct: 195 NIDGAEDHCNKTAVRKVIS 213


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 GAKIAP*ISYLKLPKICLYGTSM 382
           GA +A  +  LK+P+ CL+G S+
Sbjct: 524 GAVVAGIVG-LKMPRYCLFGDSV 545


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 507  QEPTESNNRISCQEAYDKCKDDEPW 581
            Q+PTE     S ++ Y K + + PW
Sbjct: 975  QKPTEYLLEDSMKQQYGKRRKEPPW 999


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,059
Number of Sequences: 438
Number of extensions: 4365
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)