Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1339
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37600.1 68418.m04529 glutamine synthetase, putative similar ...   107   6e-24
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ...   105   3e-23
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ...   104   4e-23
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to...   103   1e-22
At1g48470.1 68414.m05418 glutamine synthetase, putative similar ...   103   1e-22
At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to...   102   2e-22
At3g52010.1 68416.m05705 serine carboxypeptidase S10 family prot...    29   3.5  
At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to e...    29   3.5  
At1g66520.1 68414.m07558 formyltransferase, putative similar to ...    29   3.5  
At2g35600.1 68415.m06030 expressed protein                             28   4.7  
At5g49270.1 68418.m06098 phytochelatin synthetase-related contai...    28   6.2  
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f...    28   6.2  
At1g79120.1 68414.m09226 hypothetical protein                          28   6.2  

>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (Glutamate--
           ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
          Length = 356

 Score =  107 bits (257), Expect = 6e-24
 Identities = 49/83 (59%), Positives = 58/83 (69%)
 Frame = +1

Query: 250 STPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 429
           S   DKI+A YIW+ GSG  +R K RTL      P  LP WN+DGSST QA G +S+  L
Sbjct: 13  SDSTDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIL 72

Query: 430 VPRAIYKDPFRRGNHILVMCDTY 498
            P+AI+KDPFRRGN+ILVMCD Y
Sbjct: 73  YPQAIFKDPFRRGNNILVMCDAY 95



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 510 EPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLR-PFGWP 641
           EP  +N R +  + +       + PW+GIEQEY LL  D++ P GWP
Sbjct: 100 EPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLLQKDVKWPVGWP 146


>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (Glutamate--
           ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
          Length = 356

 Score =  105 bits (252), Expect = 3e-23
 Identities = 48/83 (57%), Positives = 59/83 (71%)
 Frame = +1

Query: 250 STPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 429
           S  ++KI+A YIW+ GSG  +R K RTL      P  LP WN+DGSST QA G +S+  L
Sbjct: 13  SDNSEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVIL 72

Query: 430 VPRAIYKDPFRRGNHILVMCDTY 498
            P+AI+KDPFRRGN+ILVMCD Y
Sbjct: 73  YPQAIFKDPFRRGNNILVMCDAY 95



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 510 EPTESNNRISCQEAYDKCK--DDEPWFGIEQEYILLDSDLR-PFGWP 641
           EP  +N R +  E +       + PW+GIEQEY LL  D+  P GWP
Sbjct: 100 EPIPTNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDVNWPLGWP 146


>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (glutamate--
           ammonia ligase) [Alfalfa] SWISS-PROT:P04078
          Length = 356

 Score =  104 bits (250), Expect = 4e-23
 Identities = 48/83 (57%), Positives = 58/83 (69%)
 Frame = +1

Query: 250 STPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 429
           S   D+I+A YIWI GSG  +R K RTL      P  LP WN+DGSST QA G +S+  +
Sbjct: 13  SDSTDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEVII 72

Query: 430 VPRAIYKDPFRRGNHILVMCDTY 498
            P+AI+KDPFRRGN+ILVMCD Y
Sbjct: 73  YPQAIFKDPFRRGNNILVMCDAY 95



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +3

Query: 510 EPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLR-PFGWP 641
           EP  +N R +  + ++      +E W+GIEQEY LL  D++ P GWP
Sbjct: 100 EPIPTNKRHAAAKIFEDPSVVAEETWYGIEQEYTLLQKDIKWPVGWP 146


>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
           glutamine synthetase, chloroplast precursor (glutamate--
           ammonia ligase, GS2) [Arabidopsis thaliana]
           SWISS-PROT:Q43127
          Length = 430

 Score =  103 bits (247), Expect = 1e-22
 Identities = 45/80 (56%), Positives = 60/80 (75%)
 Frame = +1

Query: 259 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPR 438
           +D+I+A YIWI GSG  LR K RT+    + P +LP WN+DGSST QA G +S+  L P+
Sbjct: 74  SDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQ 133

Query: 439 AIYKDPFRRGNHILVMCDTY 498
           AI++DPFR GN+ILV+CDT+
Sbjct: 134 AIFRDPFRGGNNILVICDTW 153



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 510 EPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLR-PFGWP 641
           EP  +N R    E +   K   + PWFGIEQEY LL  +++ P GWP
Sbjct: 158 EPIPTNKRAKAAEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLGWP 204


>At1g48470.1 68414.m05418 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (glutamate--
           ammonia ligase, GS1) [Arabidopsis thaliana]
           SWISS-PROT:Q9LVI8
          Length = 353

 Score =  103 bits (247), Expect = 1e-22
 Identities = 47/79 (59%), Positives = 58/79 (73%)
 Frame = +1

Query: 265 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 444
           KI+A YIWI GSG  +R K RTL      P  LP WN+DGSST+QA G +S+  L P+AI
Sbjct: 18  KIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAI 77

Query: 445 YKDPFRRGNHILVMCDTYK 501
           +KDPFR+GN+ILVMCD Y+
Sbjct: 78  FKDPFRKGNNILVMCDAYR 96



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +3

Query: 510 EPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLR-PFGWP 641
           +P  +NNR    + +D    K +EPWFGIEQEY LL  D++ P GWP
Sbjct: 100 DPIPTNNRHKAVKIFDHPNVKAEEPWFGIEQEYTLLKKDVKWPLGWP 146


>At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to
           glutamine synthetase, cytosolic isozyme (glutamate--
           ammonia ligase, GS1) [Arabidopsis thaliana]
           SWISS-PROT:Q9LVI8
          Length = 354

 Score =  102 bits (245), Expect = 2e-22
 Identities = 47/78 (60%), Positives = 56/78 (71%)
 Frame = +1

Query: 265 KILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAI 444
           KI+A YIWI GSG  +R K RTL      P  LP WN+DGSST QA G +S+  L P+AI
Sbjct: 18  KIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAI 77

Query: 445 YKDPFRRGNHILVMCDTY 498
           +KDPFR+GN+ILVMCD Y
Sbjct: 78  FKDPFRKGNNILVMCDAY 95



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 513 PTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLR-PFGWP 641
           PT   +  +   ++     +EPW+GIEQEY L+  D+  P GWP
Sbjct: 103 PTNKRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWP 146


>At3g52010.1 68416.m05705 serine carboxypeptidase S10 family protein
           similar to SP|P52711 Serine carboxypeptidase II-3
           precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
           profile PF0450 serine carboxypeptidase
          Length = 487

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 99  KCSLDASVEYCAKTYLRKVLSERKMFRSLH 10
           KC+    V+ C+K YL+  L+ +K+ +++H
Sbjct: 326 KCTTVLEVDPCSKDYLKAYLNRKKVQKAIH 355


>At3g15370.1 68416.m01949 expansin, putative (EXP12) similar to
           expansin GI:11191999 from [Lycopersicon esculentum];
           alpha-expansin gene family, PMID:11641069
          Length = 252

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 465 STEWILVNSTRYEVGIRIVPISLVG*AAIEVPYRQIFGSFRYEIQGAIF 319
           S  WI  ++T Y  G+   P SL G    + PY   FG+    + G +F
Sbjct: 24  SNGWIRAHATYY--GVNDSPASLGGACGYDNPYHAGFGAHTAALSGELF 70


>At1g66520.1 68414.m07558 formyltransferase, putative similar to
           methionyl-tRNA formyltransferase [strain N315-
           Staphylococcus aureus] SWISS-PROT:Q99UQ2
          Length = 355

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 558 KCKDDEPWFGIEQEYILLDSDLRPF-GWP 641
           K   DE W   +QE  +L + +R F GWP
Sbjct: 238 KIAPDEAWLSFDQEAFVLHNKVRAFAGWP 266


>At2g35600.1 68415.m06030 expressed protein
          Length = 331

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 110 SCLTCFKMADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPRRLT---RFSPP 280
           +C+ C KMAD      ED  +   G    N+  AV  K+L ++  D+  + +   + S P
Sbjct: 3   TCINCTKMADRGEEDEEDEAR---GSTTPNTKEAV--KSLTTQIKDMASKFSGSHKQSKP 57

Query: 281 TFGSTA 298
           T GS++
Sbjct: 58  TPGSSS 63


>At5g49270.1 68418.m06098 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 663

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 504 VFIRITHNEDVISSTEWILVNST 436
           VF+   HNE +IS+T+ ++VN T
Sbjct: 91  VFVGFQHNEILISATDALIVNGT 113


>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
           factor (HB-8) identical to HD-zip transcription factor
           (athb-8) (GI:7270235) [Arabidopsis thaliana]
          Length = 833

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 282 HLDRRLWRTPEVQRSHLEFHT*SSQRSAYMELRW 383
           H D   W  PEV RS  E  T  +QR+    LR+
Sbjct: 332 HFDLEPWSVPEVLRSLYESSTLLAQRTTMAALRY 365


>At1g79120.1 68414.m09226 hypothetical protein
          Length = 413

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 502 YNRSQQRATIASVVKKLTTNARMMSPGLG*NRNIFYWIQICAPSGGPGW 648
           Y RS   + I  + K   T + ++ PG   +R  + ++Q+   SGG GW
Sbjct: 7   YRRSSIFSVILRIHKLRETESFVLFPGESSSRLQWTFVQVRHKSGGGGW 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,610
Number of Sequences: 28952
Number of extensions: 329567
Number of successful extensions: 795
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)