Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1338
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   4.1  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   4.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.5  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      22   5.5  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 296  MR*KYIFTYLLLNSL 340
            +R K +FT+L+LNSL
Sbjct: 1221 LRDKMVFTFLMLNSL 1235


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 296  MR*KYIFTYLLLNSL 340
            +R K +FT+L+LNSL
Sbjct: 1221 LRDKMVFTFLMLNSL 1235


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 190 IQYTSNDLDELLFLGMYYEKKKFHYINHRWR*INKN 297
           + YT  D D  LF G    +   HY N +    N N
Sbjct: 86  LTYTKADRDVDLFRGSSTPESPEHYYNQKTLQANNN 121


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 145 KLKHRIY*KNYIQNKIQYTSNDLDELLFLGMYYEKKKFHYINHRWR 282
           KLKH +  K+Y + +I  T      +L    ++     H  N  WR
Sbjct: 117 KLKHMLIWKSYKRTQIFITCELFFVILLWISFFLNFMLHCNNTTWR 162



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 394 IRLYLKTKQKKSFLIQFCKTV 332
           I LY  +K  +  LIQFC  V
Sbjct: 168 IVLYTLSKMSQVMLIQFCAFV 188


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 201 CILYFILNIIFLVNTML 151
           C LY+IL I  +VN  L
Sbjct: 168 CSLYYILQITLIVNYAL 184


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +3

Query: 42  CIYVTLLHKC 71
           CI++++LHKC
Sbjct: 85  CIHLSVLHKC 94


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +1

Query: 142 AKLKHRIY*KNYIQNKIQYTSNDLDELLFLGMYYEKKKFHYI 267
           A LK  +    ++Q  I+Y S D + +   G        HY+
Sbjct: 157 AGLKDMVMALKWVQRNIKYFSGDPNNVTIFGESAGAAAVHYL 198


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 660 RYQRCGPQEALGSDVQLRARPPGFGAP 580
           R +RC P   L  D + R   P  G+P
Sbjct: 181 REERCDPDRPLPLDQKARDLSPRNGSP 207


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 555 VLGLPSPGAEHRS 593
           +  LPSPG++ RS
Sbjct: 406 IANLPSPGSDQRS 418


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 140 CAFCLVL*HSISVCSFQHVK*HIAFV 63
           CAF +   H +  C+F     H+ F+
Sbjct: 171 CAFIIFTMHLLFCCAFIFFNMHLLFL 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,787
Number of Sequences: 336
Number of extensions: 3510
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)