Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1338
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   7.9  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 223 IIRLSRSMYTVFYFEYNFFSKYDALVWLV 137
           I++ +  MY VFY    F+  Y   VWL+
Sbjct: 305 IVQYTPHMYYVFYITSTFWIIYLLYVWLI 333


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 94  KLHTEILCYSTRQNAQAKLKHRIY*KNYIQNKIQYTSNDLD 216
           KLH+++  +S + NA ++L   +  +N +QN   ++S  +D
Sbjct: 326 KLHSKVDVHSKKLNALSQLNPILRSENVLQNDNHHSSLSMD 366


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 57  LLHKCDMLFYVLKTTYGNTMLQYKTKCTSQ 146
           L+  C +LF  +KTT+G     Y  K  +Q
Sbjct: 224 LVTNCSLLFEAIKTTFGLEKDSYVVKAGNQ 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,936
Number of Sequences: 5004
Number of extensions: 55327
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)