Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1338
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1721 - 39426957-39428005,39428812-39428839 88 5e-18
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 82 5e-16
05_04_0255 + 19462668-19462695,19463443-19464491 77 1e-14
08_01_0142 - 1121762-1122822,1123087-1123114 73 2e-13
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 65 6e-11
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 46 4e-05
02_04_0557 + 23865202-23865437,23865469-23865997 30 1.5
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 30 2.0
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 29 4.6
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 29 4.6
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 28 6.1
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 88.2 bits (209), Expect = 5e-18
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = -1
Query: 692 QSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKA 513
QSEEEA+V+LNA+N + K+PW L+FS+GRALQ S L+AWGGKTEN++ Q+ I R KA
Sbjct: 269 QSEEEATVNLNAMNKLSTKKPWALSFSFGRALQQSTLKAWGGKTENVVKAQKAFITRCKA 328
Query: 512 N 510
N
Sbjct: 329 N 329
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 81.8 bits (193), Expect = 5e-16
Identities = 35/61 (57%), Positives = 46/61 (75%)
Frame = -1
Query: 692 QSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKA 513
QSEEEAS +LNA+N +++ +PW LTFS+GRALQ S ++ WGGK EN+ A Q + R KA
Sbjct: 461 QSEEEASQNLNAMNKLEVLKPWTLTFSFGRALQQSTIKKWGGKKENVAAAQAAFLARCKA 520
Query: 512 N 510
N
Sbjct: 521 N 521
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 77.4 bits (182), Expect = 1e-14
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = -1
Query: 692 QSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKA 513
QSEEEA+++LNA+N + K+PW L+FS+GRALQ S L+AW GK ENI + + R KA
Sbjct: 269 QSEEEATLNLNAMNKLSTKKPWSLSFSFGRALQQSTLKAWSGKAENIEKARAAFLTRCKA 328
Query: 512 N 510
N
Sbjct: 329 N 329
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = -1
Query: 692 QSEEEASVHLNAINAVDL--KRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRA 519
QSEEEA+ +LNA+N V K+PW LTFS+GRALQ S L+AW GK EN+ Q L+ R
Sbjct: 271 QSEEEATRNLNAMNQVASRGKKPWSLTFSFGRALQQSTLKAWAGKAENVGKAQAALLARC 330
Query: 518 KAN 510
+AN
Sbjct: 331 RAN 333
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = -1
Query: 692 QSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKA 513
QSE EA+ +LNA+N PW ++FSY RALQ + L+ WGG+ EN+ A Q L+ RAKA
Sbjct: 302 QSEVEATQNLNAMNQGP--NPWHVSFSYARALQNTCLKTWGGQPENVKAAQDALLLRAKA 359
Query: 512 N 510
N
Sbjct: 360 N 360
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = -1
Query: 668 HLNAIN-AVDLKRPWV--LTFSYGRALQASVLRAWGGKTENILAGQQELIKRAK 516
+LNA+N A PW ++FSY RALQ + L+ WG + EN+ A Q EL A+
Sbjct: 356 NLNAMNQAAPSANPWRWRVSFSYARALQNTCLKTWGSRRENVAAAQGELAGAAR 409
>02_04_0557 + 23865202-23865437,23865469-23865997
Length = 254
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 594 GFGAPRLGREDREHSRRTAGADQAC*GQRLAAVGKYVAGSIPSLAAS 454
G A LGR R RR G + G + G + A S+ SLAAS
Sbjct: 119 GLAAAALGRRGRRGRRRGGGRGRNVYGCAVLGSGLFSAASVASLAAS 165
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -2
Query: 241 NTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 92
N F K ++ + +++ + YNFF + +V F YC ++ P +F
Sbjct: 322 NLFRKMLMEIKVTIWKKIHVIYNFFLIRKIIAHIVTFAFYC-LIIPATIF 370
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 287 SIKMR*KYIFTYLLLNSLTKLN 352
++K R +YIFTYLL N +LN
Sbjct: 333 AVKKRDEYIFTYLLQNKAVELN 354
>04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 565 RPRTFSPDSRS*SSVLRPTSRSSRQIRCRLYSF--AGRF*IELCQISRL 425
RPR S D S SVL+ TS +SR++ RL+ F G ELC +L
Sbjct: 975 RPRD-SDDGYSSDSVLKHTSSNSRKLGQRLFVFVIGGATRSELCAAHKL 1022
>06_01_0883 +
6768998-6769381,6769518-6769616,6769664-6769726,
6770883-6770931,6771338-6771405,6771463-6771715,
6772244-6772380,6772708-6772821,6773059-6773258,
6773367-6773561,6773650-6773812
Length = 574
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 190 FYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 95
FY Y+FF + +V F+LYC +V P+ V
Sbjct: 397 FYLLYSFFFVRKVVAHVVPFMLYC-VVIPFSV 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,645,014
Number of Sequences: 37544
Number of extensions: 328955
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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