Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1338
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)                  90   1e-18
SB_39902| Best HMM Match : Glycolytic (HMM E-Value=1.2)                70   2e-12
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      31   0.89 
SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.2  
SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
          Length = 949

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 40/61 (65%), Positives = 50/61 (81%)
 Frame = -1

Query: 692 QSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKA 513
           QSEE+A++HLNAIN    K+PW LTFS+GRALQAS L+AW GK+  + AGQ+E +KRAKA
Sbjct: 273 QSEEQATIHLNAINQYQGKKPWKLTFSFGRALQASALKAWSGKSGCVKAGQEEFLKRAKA 332

Query: 512 N 510
           N
Sbjct: 333 N 333


>SB_39902| Best HMM Match : Glycolytic (HMM E-Value=1.2)
          Length = 71

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 29/43 (67%), Positives = 37/43 (86%)
 Frame = -1

Query: 638 KRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKAN 510
           K+PW LTFS+GRALQAS L+AW GK++ + AGQ+E +KRAKAN
Sbjct: 2   KKPWKLTFSFGRALQASALKAWSGKSDCVKAGQEEFLKRAKAN 44


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 5   ESTTTTLLEYKQMHLRDIITQ--MRYVILRAENYIRKYYATVQDKMH 139
           +S TT    ++    RD  T    RY  + AENYIRK + +    MH
Sbjct: 336 DSPTTAAFNFRLKGFRDPPTDHYSRYYWMEAENYIRKEFCSNNQAMH 382


>SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 145 KLKHRIY*K-NYIQNKIQYTSNDLDELLFLGMYYEKKKFHYINH 273
           KL + +Y     I +  + T+++L+E L LG+YY  K  HY+ +
Sbjct: 108 KLANEVYEAYEKIYDDCKTTASELNESLGLGIYYGNKFEHYLEN 151


>SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 701

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 537 LLSGENVLGLPSPGAEHRSLEGAPVAERQNPGPLEVHSVDSVQMHRG 677
           L    +VLG P P    R  E  P + R++  P  V +VDS     G
Sbjct: 345 LFDRSSVLGAPEPMPPIREKESPPGSPRKHRRPRPVKTVDSYDSQDG 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,654,115
Number of Sequences: 59808
Number of extensions: 386299
Number of successful extensions: 1016
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)