Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1337
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 TRPSGRWCEXPSAGLC 441
           ++ S + CE PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 TRPSGRWCEXPSAGLC 441
           ++ S + CE PSAGLC
Sbjct: 45  SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 394 TRPSGRWCEXPSAGLC 441
           ++ S + CE PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 262 WVKIQRLANFXRNDRKSRHRRIKK 191
           WV   R ++   + R  R RR+KK
Sbjct: 193 WVYCTRYSDRPSSGRSPRTRRVKK 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,611
Number of Sequences: 336
Number of extensions: 3190
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)