Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1336
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    24   1.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.9  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.5  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 270 SAQSGQKCCLNIS 232
           S+Q GQK CLN+S
Sbjct: 32  SSQKGQKTCLNLS 44


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 461 TATILVYAIGAGITAALAPDLPSNCSSLKYLKCTHSDYEA 580
           T  +L  ++       +A ++  N SSL+YL   ++D  A
Sbjct: 465 TPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLSA 504


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +1

Query: 400 SITADACTDSAAHKCNYELFNRNNFSIRYWSWNYRGSGTR 519
           ++ ADA   +   K   E F   NF      W Y   G R
Sbjct: 111 AVAADATKRATMAKSALEFFETYNFDGLDVDWEYPLEGDR 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,102
Number of Sequences: 336
Number of extensions: 3609
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)