Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1336
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 6e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 28 8.6
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = -1
Query: 117 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -1
Query: 102 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -1
Query: 102 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -1
Query: 102 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -1
Query: 102 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 44
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -1
Query: 99 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 1
RT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 61
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -1
Query: 99 RTSAKAFAKGVFINQERKLEVRRRLDT 19
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/35 (65%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Frame = -1
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ AK VFINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTI 42
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 124 VKFLDRRKTNISESICQRCFHQSRTKV 44
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = -1
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ + VFINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTI 42
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 124 VKFLDRRKTNISESICQRCFHQSRTKV 44
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -1
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ + FINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 121 KFLDRRKTNISESICQRCFHQSRTKV 44
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -1
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ + FINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 124 VKFLDRRKTNISESICQRCFHQSRTKV 44
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -1
Query: 102 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 1
R+T+ ++ + FINQERKLE RRR DT LVLT+
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 124 VKFLDRRKTNISESICQRCFHQSRTKV 44
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 507 AAVIPAPIAYTKIVAVKKL 451
AAVIPAPIAY K+VAVKKL
Sbjct: 35 AAVIPAPIAYIKVVAVKKL 53
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 507 AAVIPAPIAYTKIVAVKKL 451
AAVIPAPIAY K+VAVKKL
Sbjct: 80 AAVIPAPIAYIKVVAVKKL 98
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 507 AAVIPAPIAYTKIVAVKKL 451
AAVIPAPIAY K+VAVKKL
Sbjct: 72 AAVIPAPIAYIKVVAVKKL 90
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 507 AAVIPAPIAYTKIVAVKKL 451
AAVIPAPIAY K+VAVKKL
Sbjct: 25 AAVIPAPIAYIKVVAVKKL 43
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 507 AAVIPAPIAYTKIVAVKKL 451
AAVIPAPIAY K+VAVKKL
Sbjct: 12 AAVIPAPIAYIKVVAVKKL 30
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -1
Query: 504 AVIPAPIAYTKIVAVKKL 451
AVIPAPIAY K+VAVKKL
Sbjct: 9 AVIPAPIAYIKVVAVKKL 26
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 186 KTNKIEPRSYSIIPCTKYSSSIFARFEHSNLFKVKLSAHL 305
K + ++ Y+ + +S F RFEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 524 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 649
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 648 PAAFLGCGSVSQAPSPESNPD 710
P + +VSQAPSPESNP+
Sbjct: 100 PIKYWDVVAVSQAPSPESNPN 120
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 185 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 75
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 648 PAAFLGCGSVSQAPSPESNPD 710
P L +VSQAPSPESNP+
Sbjct: 44 PHMLLKGRAVSQAPSPESNPN 64
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 676 FLRLPLRNRTLI 711
FLRLPLRNRTLI
Sbjct: 225 FLRLPLRNRTLI 236
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 472 FSIRYWSWNYR-GSGTRLALQLFLV 543
FSI YW W++R SG+ +++F V
Sbjct: 797 FSIEYWRWHHRFYSGSTATIRIFYV 821
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,122,327
Number of Sequences: 59808
Number of extensions: 466685
Number of successful extensions: 1184
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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