Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1336
         (711 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          25   2.3  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          24   4.1  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    23   7.2  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          23   9.5  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 343 LNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNR 465
           +++   +  +  ++L    +I +D   DS+   CN E FN+
Sbjct: 620 ISKELTKASIIQEILNIPTTIASDVAFDSSDFPCNSEEFNK 660


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 707 RVRFRRGSLRNATTSKEGSRRANYPLPARG 618
           R R R    R+ + ++    R+  PLPARG
Sbjct: 437 RSRSRTSQSRSRSKTRTSRSRSRTPLPARG 466


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 702 SIPEREPEKRYHIQGRQQARKLPTPGTGR 616
           S+P   P +     G Q  R  P P TGR
Sbjct: 433 SVPRPLPSQEASPSGEQPGRMGPPPPTGR 461


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 117 SWIVARRTSAKAFAKGVFINQERKLEVRR 31
           +W++  RT      KG    Q +KLE R+
Sbjct: 23  TWVMVYRTEKYQKLKGEVEKQSKKLEKRK 51


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,422
Number of Sequences: 2352
Number of extensions: 14969
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)