Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1336
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    31   0.57 
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    29   2.3  
At5g46640.1 68418.m05744 DNA-binding family protein contains a A...    28   7.0  
At3g20000.1 68416.m02530 porin family protein low similarity to ...    28   7.0  
At4g10890.1 68417.m01772 expressed protein                             27   9.3  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   9.3  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    27   9.3  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   9.3  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    27   9.3  

>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 488 GAGITAALAPDLPSNCSSLKYLKCTHSDYE 577
           G   +  L+ DL +NCSSL+YL  +H+  E
Sbjct: 157 GNSFSGTLSDDLFNNCSSLRYLSLSHNHLE 186


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 567 PITRPRKSPVSLFFVTTSPCREWVICAPAAFLGCGSVSQAPSPESNP 707
           PI+ P KSP +    TTSP +   + +P         + A SP  +P
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESP 70


>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 386

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 645 APAAFLGCGSVSQAPSPESNPD 710
           APA  L  GSVSQ PS ES+ +
Sbjct: 320 APANMLNFGSVSQGPSSESSEE 341


>At3g20000.1 68416.m02530 porin family protein low similarity to
           haymaker protein [Mus musculus] GI:17834089,
           mitochondrial outer membrane protein MOM35 [Mus
           musculus] GI:6650562; contains Pfam profile PF01459:
           Eukaryotic porin
          Length = 309

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 364 RRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNNFSIRYWSWNYRGSGTRLALQL 534
           R +TD  L  R+   AD  TD    K N  + N  + S   ++++Y GS  R  LQL
Sbjct: 110 RVMTDGRLNARLK--ADL-TDKLVVKANALITNEEHMSQAMFNFDYMGSDYRAQLQL 163


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 106 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 5
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 69  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 203
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 105 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFARFEHSNLFK 284
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +  +S  +      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 285 VKLSAHL 305
               AHL
Sbjct: 112 KAAEAHL 118


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 238 IQAAFLPALSTLICSK*NCRPTSTLTEEH 324
           +  +  P+ S L+C K +C   ST TE H
Sbjct: 385 VDTSLEPSASQLLCQKCHCAVKSTSTENH 413


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 313 TEEHRDRILILNRRFLERRLT--DDMLRKRVSITADACTDSAAHKCNYELFNRNN 471
           +E H D    ++RR+LE +    DD++  R  +   +  DS+  K    L + ++
Sbjct: 38  SESHSDADSAIHRRYLEEKFAEEDDLIAARRGLRLQSMDDSSVFKRRSSLLSNSS 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,141
Number of Sequences: 28952
Number of extensions: 317816
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)