Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1330
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IJC3 Cluster: Protoporphyrinogen oxidase, putative; n...    33   6.3  
UniRef50_Q8I5G7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  

>UniRef50_Q8IJC3 Cluster: Protoporphyrinogen oxidase, putative; n=1;
           Plasmodium falciparum 3D7|Rep: Protoporphyrinogen
           oxidase, putative - Plasmodium falciparum (isolate 3D7)
          Length = 609

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -2

Query: 307 QHVNLYE*HVVLVCNKHIFSSVHR----IMLLNFFLSFSY*MNIEITLFFKKTQI 155
           Q+  +Y  ++VL  N  I S++ R    + + +  L+FSY   I I+L+FKK+ I
Sbjct: 403 QNKTIYGKNIVLAVNSKICSNIMRNILPVNIRDILLNFSYSSIISISLYFKKSDI 457


>UniRef50_Q8I5G7 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1710

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -2

Query: 295  LYE*HVVLVCNKHIFSSVHRIMLLNFFLSFSY*MNIEI-TLFFKKTQILASSYRLF*FCI 119
            +YE  ++ + NK +     +I+ +N++L   Y MN+ I TL +   ++  S Y +  +  
Sbjct: 1316 IYEKFIIFILNKMVLLKKPQIVNINYYL--YYKMNLCIHTLKYVHVKLYKSYYYILMYWK 1373

Query: 118  LASQNMVARTHSFLIYVGVFHFN 50
                 ++ R  +F  Y+   HFN
Sbjct: 1374 FIILRILQRNKTFKNYMDFIHFN 1396


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,646,858
Number of Sequences: 1657284
Number of extensions: 10101884
Number of successful extensions: 18479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18467
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)