Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1330
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.0  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   5.3  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   5.3  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   5.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   9.2  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 616 IVNFGNIYRTHIIFKTYCLY 557
           I+NFG      +IF + C+Y
Sbjct: 168 IINFGYTLAKFMIFTSTCIY 187


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 583 IIFKTYCLYILIVLQCCT 530
           ++  TYCL++L V   C+
Sbjct: 286 LVDSTYCLFLLFVFCDCS 303


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 583 IIFKTYCLYILIVLQCCT 530
           ++  TYCL++L V   C+
Sbjct: 286 LVDSTYCLFLLFVFCDCS 303


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 583 IIFKTYCLYILIVLQCCT 530
           ++  TYCL++L V   C+
Sbjct: 286 LVDSTYCLFLLFVFCDCS 303


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 444 LCPMFVDGVIQSSELCSSFAQAVQM 370
           L P+F   +I  S +C S AQ + M
Sbjct: 185 LPPIFAPTMINPSAICESAAQLLFM 209


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 444 LCPMFVDGVIQSSELCSSFAQAVQM 370
           L P+F   +I  S +C S AQ + M
Sbjct: 185 LPPIFPPTMINPSAICESAAQLIFM 209


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/40 (22%), Positives = 16/40 (40%)
 Frame = -3

Query: 336 YYREIIIIFYNMLIYMNNMLFLCVINIYFHQFTELCFLIF 217
           YY  ++     ++  M+ +  LC+   Y      LC   F
Sbjct: 262 YYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYF 301


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 161 SFFKEQSYFYIHLV*ETKEKIKKHNS 238
           +FF  +   Y H+   + E I+ H+S
Sbjct: 127 TFFVNEKQSYFHIATTSNEFIRVHHS 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,905
Number of Sequences: 336
Number of extensions: 3112
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)