Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1330
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    27   3.3  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   4.3  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    26   4.3  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   5.7  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   5.7  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   7.5  

>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 565 CLYILIVLQCCT*C*GHCSSLPLLSAVASF*LV*FPSNIVSLSYVCRW 422
           CL+IL++L           ++PL+S V +  +V     +V + Y+C W
Sbjct: 129 CLFILLLLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKILYICHW 176


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 565 CLYILIVLQCCT*C*GHCSSLPLLSAVASF*LV*FPSNIVSLSYVCRW 422
           CL++L++L           ++PL+S V +  +V     +V + Y+C W
Sbjct: 129 CLFVLLLLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKILYICHW 176


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 565 CLYILIVLQCCT*C*GHCSSLPLLSAVASF*LV*FPSNIVSLSYVCRW 422
           CL++L++L           ++PL+S V +  +V     +V + Y+C W
Sbjct: 129 CLFVLLLLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKILYICHW 176


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 283 HVVLVCNKHIFSSVHRIMLLNFFLSFSY*MNIEIT 179
           H++  C KH   ++H+I+L  F  +F      EIT
Sbjct: 275 HLLSRCGKHAVQNIHKILLPIFQKNFLTGFPAEIT 309


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 285 YSYKLTCCRI*LLFLCNKHFVIMTXRSSTSAL 380
           Y  KL C R+   FL +KH ++MT  +  S L
Sbjct: 69  YLRKLNCSRV-RKFLTDKHLMLMTLATGISRL 99


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 243 TDEN--ICLLHTRTTCYSYKLTCCRI*LLFLCN 335
           T+EN  + LL T++  +   LTC  I +LF C+
Sbjct: 828 TNENYKVFLLSTKSGGFGINLTCANIVILFDCS 860


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,307
Number of Sequences: 5004
Number of extensions: 48195
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)