Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1330
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE...    27   8.6  

>At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE) /
           sigma-like factor (SIG5) identical to RNA polymerase
           sigma subunit SigE [Arabidopsis thaliana] GI:4972299,
           sigma-like factor [Arabidopsis thaliana] GI:4033838;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
          Length = 517

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 306 NMLIYMNNMLFLCVINIYFHQFT 238
           N LI  N  L L V+N YFH+FT
Sbjct: 281 NKLIKHNLRLVLFVMNKYFHEFT 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,584,322
Number of Sequences: 28952
Number of extensions: 225079
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)