Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1328
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   124   1e-29
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    28   1.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   4.8  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   4.8  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   4.8  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   4.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.4  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   6.4  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   6.4  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.5  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   8.5  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  124 bits (300), Expect = 1e-29
 Identities = 52/80 (65%), Positives = 70/80 (87%)
 Frame = +2

Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
           V++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H  
Sbjct: 52  VMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYE 111

Query: 434 RNDEEVGAGDQGLMFGYATD 493
           +  EE+GAGDQG+MFGYATD
Sbjct: 112 KALEELGAGDQGIMFGYATD 131



 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 39/47 (82%), Positives = 42/47 (89%)
 Frame = +3

Query: 114 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +KTGM
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGM 51



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 26/45 (57%), Positives = 32/45 (71%)
 Frame = +1

Query: 508 LPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGA 642
           LPLT++LAHKLN  ++  RR+G   W RPD+KTQVT EY    GA
Sbjct: 137 LPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGA 181



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 645 VPQRVHTVVVSLQHSEKITLETLRDEIREK 734
           +P+RV T+VVS QH++ I+ E LR EI EK
Sbjct: 183 IPRRVDTIVVSAQHADSISTEDLRSEILEK 212


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 561 QAKWRILVGKTRFKNTGYLRICICWWCTVPQRVHTVVVSLQHSEKITLETLRD 719
           Q KW +L        T +  I   W CT+ +RV  + V L      +  TL D
Sbjct: 86  QRKWELLQNLYSNLTTCFSHIDGAWLCTIVKRVSKLYVKLSLQLDTSTPTLED 138


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 164  RPNKRRYSRRAPESGSGRKSCM 229
            +P KR+Y+R+AP   S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 18  WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 188
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 286 SFGCDFATQKHIPVLV 239
           SF  DFATQK +PV+V
Sbjct: 261 SFQTDFATQKSLPVVV 276


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 150 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 254
           P K  ++  D ++ + H N DPDAK+A   ++K  M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = -1

Query: 501 SVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPLDESS*PICL 322
           SVSS +       +P  TSSS+L S +  +      SS+S TL    S  L  SS P   
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSLSTSSIPSTS 244

Query: 321 TVSRTT 304
           + S +T
Sbjct: 245 SSSSST 250


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 385 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 260
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 281 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 400
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 170 LVAHFVWMTLANRFRCEQKY*SIFHII 90
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 609  GYLRICICWWCTVPQRVHTVVVSLQHSEKITLE 707
            GYLRI  C   ++P  V+T     +HS+ IT +
Sbjct: 1746 GYLRILSCLLVSLPAMVYT----YEHSDPITFD 1774


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 416 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 297
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,290
Number of Sequences: 5004
Number of extensions: 74113
Number of successful extensions: 219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)