Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1328
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0264 + 2030080-2031270                                          100   1e-21
01_02_0051 - 10655867-10657057                                         99   4e-21
01_03_0090 - 12347165-12348349                                         95   4e-20
12_02_0655 + 21588662-21589051                                         31   0.95 
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    31   0.95 
02_01_0375 + 2712289-2712957                                           29   3.8  
01_01_1026 - 8124929-8125120,8125294-8125344,8125610-8125743,812...    28   6.7  

>05_01_0264 + 2030080-2031270
          Length = 396

 Score =  100 bits (239), Expect = 1e-21
 Identities = 46/82 (56%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
 Frame = +2

Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
           V++ GEIT+KANVDY+K+VRET ++IG+  +  G D   C V++ ++QQSP+IA GVH +
Sbjct: 54  VMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGH 113

Query: 434 --RNDEEVGAGDQGLMFGYATD 493
             +  EE+GAGDQG MFGYATD
Sbjct: 114 FTKRPEEIGAGDQGHMFGYATD 135



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = +3

Query: 114 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
           FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT M
Sbjct: 7   FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNM 53



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 24/47 (51%), Positives = 32/47 (68%)
 Frame = +1

Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGAQ 645
           ++PL+ VLA KL  ++ E+R+NG   W RPD KTQVT EY    GA+
Sbjct: 140 LMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGAR 186



 Score = 34.3 bits (75), Expect = 0.10
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 645 VPQRVHTVVVSLQHSEKITLETLRDEIRE 731
           VP RVHTV++S QH E +T + +  +++E
Sbjct: 187 VPVRVHTVLISTQHDETVTNDEIAADLKE 215


>01_02_0051 - 10655867-10657057
          Length = 396

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 45/82 (54%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
 Frame = +2

Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
           V++ GEIT+KANVDY+K+VR+T + IG+  +  G D + C V++ ++QQSP+IA GVH +
Sbjct: 54  VMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGH 113

Query: 434 --RNDEEVGAGDQGLMFGYATD 493
             +  EE+GAGDQG MFGYATD
Sbjct: 114 FTKRPEEIGAGDQGHMFGYATD 135



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/53 (71%), Positives = 44/53 (83%)
 Frame = +3

Query: 96  MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
           M +   FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT M
Sbjct: 1   MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNM 53



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/46 (52%), Positives = 31/46 (67%)
 Frame = +1

Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGA 642
           ++PL+ VLA KL  ++ E+R+NG   W RPD KTQVT EY    GA
Sbjct: 140 LMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGA 185



 Score = 34.3 bits (75), Expect = 0.10
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 645 VPQRVHTVVVSLQHSEKITLETLRDEIRE 731
           VP RVHTV++S QH E +T + +  +++E
Sbjct: 187 VPLRVHTVLISTQHDETVTNDEIAADLKE 215


>01_03_0090 - 12347165-12348349
          Length = 394

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 44/82 (53%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
 Frame = +2

Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
           V++ GEIT+KA VDY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GVH +
Sbjct: 53  VMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGH 112

Query: 434 --RNDEEVGAGDQGLMFGYATD 493
             +  EE+GAGDQG MFGYATD
Sbjct: 113 FTKRPEEIGAGDQGHMFGYATD 134



 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 41/65 (63%), Positives = 48/65 (73%)
 Frame = +3

Query: 114 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMCFCVAKSHPKLTW 293
           FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT M     +   K T 
Sbjct: 6   FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65

Query: 294 IIKKL 308
             +K+
Sbjct: 66  DYEKI 70



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/46 (52%), Positives = 32/46 (69%)
 Frame = +1

Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGA 642
           ++PL+ VLA KL  ++ E+R+NG   W RPD KTQVT EY+   GA
Sbjct: 139 LMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGA 184



 Score = 34.3 bits (75), Expect = 0.10
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 645 VPQRVHTVVVSLQHSEKITLETLRDEIRE 731
           VP RVHTV++S QH E +T + +  +++E
Sbjct: 186 VPVRVHTVLISTQHDETVTNDEIAADLKE 214


>12_02_0655 + 21588662-21589051
          Length = 129

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +2

Query: 62  WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRAPESGSGRK 220
           WI   QR ++  G W           RGS    V P +RR SRR P SG  R+
Sbjct: 27  WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71


>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
            29283735-29283917,29284362-29284467,29284627-29284651,
            29284736-29284855,29284920-29284997,29285646-29285774,
            29285976-29285989,29286168-29287944,29288344-29288489,
            29288921-29291029
          Length = 1747

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 530  ASTTVNGSILLSHLLHNRTSSPGLLPQLPRHFCSHAPQ 417
            +S+ +NG  L   +L   +SS G L QLPR+F S  P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712


>02_01_0375 + 2712289-2712957
          Length = 222

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 520 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 627
           VV   +L++ +   +++G  WW RPDS      EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199


>01_01_1026 -
           8124929-8125120,8125294-8125344,8125610-8125743,
           8125842-8126096,8126175-8126513,8126607-8126748,
           8127068-8127199
          Length = 414

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 636 WCTVPQRVHTVVVSLQHSEKITLETLRDE 722
           WC V +  H++ V+  H  K T+E  R+E
Sbjct: 334 WCFVAETDHSLAVTNHHQVKETMEEKREE 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,841,270
Number of Sequences: 37544
Number of extensions: 493187
Number of successful extensions: 1283
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)