Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1328
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 8e-34
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 5e-31
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 2e-20
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 85 7e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 46 3e-05
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 33 0.32
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 0.73
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 31 0.97
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 140 bits (340), Expect = 8e-34
Identities = 61/80 (76%), Positives = 74/80 (92%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+IA GVH
Sbjct: 9 IVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDIAQGVHIG 68
Query: 434 RNDEEVGAGDQGLMFGYATD 493
R+DE++GAGDQGLMFGYATD
Sbjct: 69 RSDEDLGAGDQGLMFGYATD 88
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGG 639
++PLTVVLAH LN+++A+ RRNG W RPDSKTQVT EY F GG
Sbjct: 93 LMPLTVVLAHGLNKRLADCRRNGSLPWVRPDSKTQVTVEYKFQGG 137
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 645 VPQRVHTVVVSLQHSEKITLETLRDEIRE 731
VP RVHT+V+S+QH I L+ +R E+ +
Sbjct: 140 VPLRVHTIVISVQHDPNIELDVMRKELMD 168
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 131 bits (317), Expect = 5e-31
Identities = 59/80 (73%), Positives = 69/80 (86%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
+LLCGEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH
Sbjct: 78 ILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVG 137
Query: 434 RNDEEVGAGDQGLMFGYATD 493
R +E+VGAGDQGLMFGYATD
Sbjct: 138 REEEDVGAGDQGLMFGYATD 157
Score = 98.3 bits (234), Expect = 6e-21
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +3
Query: 108 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KTGM
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGM 77
Score = 71.7 bits (168), Expect = 6e-13
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGG 639
++PLTVVLAHK+NQK+AE RR+G WARPDSKTQVT EY F G
Sbjct: 162 LMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHG 206
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 645 VPQRVHTVVVSLQHSEKITLETLRDEIREK 734
+P RVHT+V+S+QH IT+E LR E+ EK
Sbjct: 209 IPLRVHTIVISVQHDPTITMENLRKELMEK 238
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 123 bits (297), Expect = 1e-28
Identities = 57/80 (71%), Positives = 65/80 (81%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
VLL GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA VH N
Sbjct: 99 VLLFGEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLN 158
Query: 434 RNDEEVGAGDQGLMFGYATD 493
R D+E+GAGDQGLMFGYATD
Sbjct: 159 RRDDEIGAGDQGLMFGYATD 178
Score = 91.9 bits (218), Expect = 5e-19
Identities = 42/55 (76%), Positives = 44/55 (80%)
Frame = +3
Query: 90 YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
Y D FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKTG+
Sbjct: 44 YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGL 98
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGA 642
++PLT VLAHKL ++AE R+ W PD KTQVT +Y GA
Sbjct: 183 LMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYRLERGA 228
Score = 35.9 bits (79), Expect = 0.034
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 645 VPQRVHTVVVSLQHSEKITLETLRDEIRE 731
+P+RVHTV++S QH+ + +E +R ++E
Sbjct: 230 IPERVHTVLISTQHTPDVGIEEIRHHLKE 258
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 96.7 bits (230), Expect = 2e-20
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +3
Query: 108 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KTGM
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGM 57
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 352
+++CGEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 58 IVVCGEITSLANVDYQKVVRDTIKQIGYDDSSK 90
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 84.6 bits (200), Expect = 7e-17
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +3
Query: 108 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 230
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEY 624
++P V AH+L ++ +ELRRNG W RPD+K+QVT +
Sbjct: 29 LMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTINW 68
Score = 34.7 bits (76), Expect = 0.079
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 443 EEVGAGDQGLMFGYATD 493
E+ GAGDQGLMFGYAT+
Sbjct: 8 EDQGAGDQGLMFGYATN 24
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3
Query: 301 LIIHVSFGCDFA-TQKHIPVLVM-VSHATFASGS*FRCASRIASLIWSHILSG 149
L H++F C T + V+ +S + A + FRC+ R S++W H+ +G
Sbjct: 263 LTCHLNFACRVCRTYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 266 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 367
GEITS N+D +K+ + K I YD G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 488 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 390
L N T+ P + PQ P H SHA + ++I G+
Sbjct: 99 LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 1 VWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 126
VW ++GL+ N E K + T++ PT+ V++W + + F +H
Sbjct: 419 VWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 461
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 1 VWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 126
VW ++GL+ N E K + T++ PT+ V++W + + F +H
Sbjct: 73 VWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 115
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 39 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 215
MP G +K N + D D +L +S+ + D++C + I AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 39 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 215
MP + G +K N + D D +L S+ + D++C + I AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 165 DQISDAILDAHLNQDPDAKVACETITKTGMCFCVAKSHPKLTWIIKKL 308
D+ +D +DA + DP + A T T T CVA+ + W+++ +
Sbjct: 1410 DKQTDCPMDAPDSSDPTSTAAPSTTTVTSTAVCVAR-YTNGMWVLQDI 1456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,605,209
Number of Sequences: 59808
Number of extensions: 587397
Number of successful extensions: 1701
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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