Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1324
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.070
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   1.5  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   6.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 535 RNNFSIRYWSWNYRGCWHQTC 597
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = +1

Query: 523  ELFNRNNFSIRYWSWNYRGCWHQTC 597
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 273 LFCWFSDSEVMINRDNWGHSYCDVRGE 193
           L+CW S  ++ + +  W    CD+  E
Sbjct: 548 LYCWSSFLKISVLQSLWASPTCDLMYE 574


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +1

Query: 544 FSIRYWSWNYRGCWHQ 591
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 24  CPPSHCSNVGGSLDDIG 74
           C P  C N G  LD +G
Sbjct: 264 CRPGACHNNGTCLDKVG 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,361
Number of Sequences: 336
Number of extensions: 3654
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)