Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1324
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.95 
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    27   2.9  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.7  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.7  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   8.8  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 188 LDRRKTNISESICQRCFHQSRTKVRGSKAIRYRPSSNRPYVI*RSADVTTMARRAASGRC 9
           L+  K +I E I  RC    R  +  ++ I Y  S N P+    S DV  +    +S  C
Sbjct: 310 LEAWKLDILEDI-DRCIQCCRRFLSANQRINYSSSENNPFSF-TSQDVEALKDELSSNLC 367

Query: 8   NL 3
           +L
Sbjct: 368 DL 369


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +2

Query: 176 CDDPRISPLTSQYECPQLSLLIITSESENQQNRTEIIFYYSMHEIFKQH 322
           C D ++  + + + CP ++ +I   +SE   N     F++ +    K+H
Sbjct: 248 CID-QVEQILTNHHCPVVACIIEPIQSEGGDNHASPDFFHKLQATLKKH 295


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 634 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 735
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 206 SQYECPQLSLLIITSESENQQNRTEIIFYYSMHEIFKQHF*PA 334
           SQ    +L   +++SES   +N    + YYS+ +  K+   PA
Sbjct: 454 SQISIKKLVTWLMSSESIMSENSNRFVVYYSLCKSLKRESYPA 496


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 228 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 121
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 282 ISVLFCWFSDSEVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 121
           I  L C F ++E ++NR  W      V G  +G + +     ++ ++   IKNE
Sbjct: 92  IKSLQCLFCNNEGLLNRQEWFEHSFHVHGLNIGLADN---IVYINRLLEKIKNE 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,920
Number of Sequences: 5004
Number of extensions: 59151
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)