Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1324
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   7e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   8e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   8e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   8e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   8e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   8e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   5e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.003
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              29   5.4  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   5.4  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               28   7.1  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   9.4  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 31/39 (79%), Positives = 33/39 (84%)
 Frame = -3

Query: 190 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           SWI  RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = -3

Query: 175 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = -3

Query: 175 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = -3

Query: 175 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = -3

Query: 175 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 44


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -3

Query: 172 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           RT+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 61


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -3

Query: 172 RTSAKAFAKGVFINQERKLEVRRRLDT 92
           RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2   RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 23/35 (65%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
 Frame = -3

Query: 175 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           R+T+  ++ AK VFINQERKLE RRR DT LVLT+
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTI 42



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 197 VKFLDRRKTNISESICQRCFHQSRTKV 117
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
 Frame = -3

Query: 175 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           R+T+  ++  + VFINQERKLE RRR DT LVLT+
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTI 42



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 197 VKFLDRRKTNISESICQRCFHQSRTKV 117
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = -3

Query: 175 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           R+T+  ++  +  FINQERKLE RRR DT LVLT+
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 194 KFLDRRKTNISESICQRCFHQSRTKV 117
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = -3

Query: 175 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           R+T+  ++  +  FINQERKLE RRR DT LVLT+
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -2

Query: 197 VKFLDRRKTNISESICQRCFHQSRTKV 117
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = -3

Query: 175 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTV 74
           R+T+  ++  +  FINQERKLE RRR DT LVLT+
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTI 42



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -2

Query: 197 VKFLDRRKTNISESICQRCFHQSRTKV 117
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 304 RNIQAAFLARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYA 459
           +N +   LAR+  + +F   ++  AHLDT RR P    D+     R     RYA
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 514 CNYELFNRNNFSIRYWSWNYRGCWH 588
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 213 TNAPSYPY*SLPR---SLKTNKIE-PRSYSIIPCTKYSSSIF 326
           T+ PSYPY  LPR   SL    ++ P SY   P    ++S+F
Sbjct: 145 TSPPSYPYKPLPRIPTSLSLKSLQAPPSYYYKPLPHITTSLF 186


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 418 EPAF-FRTPAHRRYAPQTCQYHRGCVHRQRGDKCNYELFNRNNFSIRY 558
           +P F    PA R Y  Q     +G   + + D C+ + F+R+N  ++Y
Sbjct: 753 QPTFNLHAPARRTYLRQRVMV-QGMDEQWQADLCDMQAFHRDNNGVKY 799


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,883,339
Number of Sequences: 59808
Number of extensions: 472710
Number of successful extensions: 1228
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)