Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1324
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.4  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 184 IVARRTSAKAFAKGVFINQERKLEVRRR-LDTALVLTVPMSSSDPPTLLQWLGGQLP 17
           ++    +AK     V ++    +E RRR     + LT+P+  +    ++   GG+ P
Sbjct: 19  VIPAELTAKLLGNCVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMINQYGGEQP 75


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 182  RRKTNISESICQRCFHQ 132
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 738  SKEGSRRANYPLPARGGSDEK*RYG 664
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 205 VAIRMPPVIPINH 243
           +A+  PPV+P NH
Sbjct: 353 LAVPAPPVLPENH 365


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 205 VAIRMPPVIPINH 243
           +A+  PPV+P NH
Sbjct: 353 LAVPAPPVLPENH 365


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 205 VAIRMPPVIPINH 243
           +A+  PPV+P NH
Sbjct: 353 LAVPAPPVLPENH 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,640
Number of Sequences: 438
Number of extensions: 4932
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)