Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1324
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43540.1 68416.m04622 expressed protein hypothetical protein ...    31   1.1  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           29   3.3  
At4g10890.1 68417.m01772 expressed protein                             28   7.7  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    28   7.7  

>At3g43540.1 68416.m04622 expressed protein hypothetical protein
           slr1699 - Synechocystis sp. (strain PCC 6803),
           PIR:S75306
          Length = 373

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 124 RKLEVRRRLDTALVLTVPMSSSDPPTLLQWLGGQLPGAV 8
           R  +V  RLD+ LV+  P     P  ++++LGG   GAV
Sbjct: 39  RNNKVYTRLDSCLVIPPPPKFKKPRAIVKFLGGAFVGAV 77


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 124 RKLEVRRRLDTALVLTVPMSSSDPPTLLQWLGGQLPGA 11
           RK+  R   D   V  V +   DP   L W+ GQ+PGA
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGA 271


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 179 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRPYVI 63
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
           (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 450 TICSANVSVSPRMRAPTARRQMQLR 524
           T+CS+  S+   MRA  AR ++QLR
Sbjct: 804 TLCSSACSIQTGMRAKAARIELQLR 828


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,399
Number of Sequences: 28952
Number of extensions: 314415
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)