Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1322
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    27   2.0  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    26   3.5  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   3.5  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   6.1  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   6.1  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.0  

>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 PNVRNCGSSRTEQYYYRNDKPSVGK 258
           P V N GSSRT+ +Y R    + GK
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAGK 110


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 527 WLDPDVRTHRDCESTAYRSFS 465
           W+D D R  RD E    RSFS
Sbjct: 167 WVDSDPRILRDAEQVQLRSFS 187


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 279 TVVRQVSFTY*WLVVAIVILLSTRGTAVSDIWFMHS 172
           T  RQ++FT  W+ +  + ++   G + S +W  HS
Sbjct: 195 TAWRQITFT--WITLMFISMIIPIGISFSKLWKKHS 228


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 235 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 86
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 163 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 38
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 235 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 113
           C    A  +  +S G +VHA  RAA    +  A  CL   K
Sbjct: 54  CLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 430  NFSGTSC*KLFILKDR*AVLSQSL 501
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,089
Number of Sequences: 5004
Number of extensions: 45242
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)