Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1322
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1086 + 23858419-23859423,23859527-23859610                       29   2.0  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   2.0  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   8.2  
02_02_0240 + 8196140-8198248,8198381-8198650                           27   8.2  

>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = -1

Query: 274 RETG*FYLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKA 110
           +E G   LL    CD N A      +   LVHAL  AA  A   +A   L         A
Sbjct: 122 QEHGVTALLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSA 181

Query: 109 EASLAESGKDMLTVEPRESGGSK 41
            AS+  +G   L V   E+GG++
Sbjct: 182 AASIGRAGAIPLLVSLLETGGAR 204


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 193 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 95
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 94  RLGWLRP*RRSGIIP 138
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 136 PRMVASHHRPLGRVHEPNVRNCGSSRTEQYYYRNDKPSVGKTNLSHD 276
           P  VA+H RPLG +H P        +T  +  +N  P   +  +SH+
Sbjct: 36  PPTVATHTRPLGIIHPPPDIRVIIEKTATFVSKNG-PEFERRIISHN 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,843
Number of Sequences: 37544
Number of extensions: 331231
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)